myRT

myRT report for GCA_002407935.1_ASM240793v1

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Seq: DHPU01000078.1 TPA_asm: Peptococcaceae bacterium UBA5356 UBA5356_contig_14028, whole genome shotgun sequence (16527 bp)
Overview 1 RT 1: 3815-14667 bp Neighborhood of RT #1 [3815, 14667] ParE_toxin SLH SLH SLH YjdB Flg_new fn3 RVT-DGRs COG1373 Feature: gene Location: 3815-4120 bp Feature: domain Description: ParE_toxin Location: 3824-4064 bp Feature: domain Description: ParE_toxin Location: 3824-4064 bp Feature: gene Location: 4643-9610 bp Feature: domain Description: SLH Location: 4874-4997 bp Feature: domain Description: SLH Location: 4874-4997 bp Feature: domain Description: SLH Location: 5051-5177 bp Feature: domain Description: SLH Location: 5051 -51 77 bp Feature: domain Description: SLH Location: 5237-5369 bp Feature: domain Description: SLH Location: 5237-5369 bp Feature: domain Description: YjdB Location: 6971-7301 bp Feature: domain Description: YjdB Location: 6971 -7301 bp Feature: domain Description: Flg_new Location: 7769-7994 bp Feature: domain Description: Flg_new Location: 7769-7994 bp Feature: domain Description: fn3 Location: 8012-8228 bp Feature: domain Description: fn3 Location: 801 2-8228 bp Feature: gene Location: 9973-10827 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 10096-10564 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 0096-1 0564 bp Feature: gene Location: 10857-12212 bp Feature: domain Description: COG1373 Location: 10938-12201 bp Feature: domain Description: COG1 373 Location: 1 0938-1 2201 bp Feature: gene Location: 12643-14667 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG1373 (Predicted ATPase, AAA+ superfamily ), ParE_toxin (pfam05016), SLH (pfam00395), YjdB (COG5492), Flg_new (pfam09479), fn3 (pfam00041), RVT-DGRs

Seq: DHPU01000063.1 TPA_asm: Peptococcaceae bacterium UBA5356 UBA5356_contig_36916, whole genome shotgun sequence (3553 bp)
Overview 1 RT 1: 1477-3446 bp Neighborhood of RT #1 [1477, 3532] AR_FR_like_1_SDR_e RVT-GII GIIM Feature: gene Location: 1477-2490 bp Feature: domain Description: AR_FR_like_1_SDR_e Location: 1516-2470 bp Feature: domain Description: AR_FR_like_1_SDR_e Location: 1516-2 470 bp Feature: gene Location: 2725-2880 bp Feature: gene Location: 2998-3219 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3004-3145 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3004-3145 bp Feature: gene Location: 3302-3532 bp Feature: domain Description: GIIM Note: maturase Location: 3308-3446 bp Feature: domain Description: GIIM Note: maturase Location: 3308-3446 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AR_FR_like_1_SDR_e (cd05228), RVT-GII, GIIM (pfam08388)

Seq: DHPU01000086.1 TPA_asm: Peptococcaceae bacterium UBA5356 UBA5356_contig_3907, whole genome shotgun sequence (20244 bp)
Overview 1 RT 1: 11216-14986 bp Neighborhood of RT #1 [11216, 14994] gltX RVT-DGRs TPR Cu_amine_oxidN1 Flg_new Flg_new Feature: gene Location: 11216-12697 bp Feature: domain Description: gltX Location: 11222-12662 bp Feature: domain Description: gltX Location: 11222-12662 bp Feature: gene Location: 12828-13013 bp Feature: gene Location: 13258-13500 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 13282-13495 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 13 282-13 495 bp Feature: gene Location: 13611-14522 bp Feature: domain Description: TPR Location: 13710-13998 bp Feature: domain Description: TPR Location: 13 710-13 998 bp Feature: domain Description: Cu_amine_oxidN1 Location: 14100-14322 bp Feature: domain Description: Cu_amine_oxidN1 Location: 14100-143 22 bp Feature: gene Location: 14770-14994 bp Feature: domain Description: Flg_new Location: 14785-14878 bp Feature: domain Description: Flg_new Location: 14785-14878 bp Feature: domain Description: Flg_new Location: 14905-14986 bp Feature: domain Description: Flg_new Location: 14905-14986 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT gltX (PRK14895), RVT-DGRs, TPR (smart00028), Cu_amine_oxidN1 (pfam07833), Flg_new (pfam09479)

Seq: DHPU01000065.1 TPA_asm: Peptococcaceae bacterium UBA5356 UBA5356_contig_43785, whole genome shotgun sequence (6403 bp)
Overview 1 RT 1: 3-3660 bp Neighborhood of RT #1 [3, 3662] RVT-GII GIIM Creatinase_N APP_MetAP PRK14830 Feature: gene Location: 3-761 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-378 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-378 bp Feature: domain Description: GIIM Note: maturase Location: 459-663 bp Feature: domain Description: GIIM Note: maturase Location: 4 59-663 bp Feature: gene Location: 1182-2591 bp Feature: domain Description: Creatinase_N Location: 1278-1602 bp Feature: domain Description: Creatinase_N Location: 1278-1602 bp Feature: domain Description: APP_MetAP Location: 1800-2253 bp Feature: domain Description: APP_MetAP Location: 1800-2253 bp Feature: gene Location: 2919-3662 bp Feature: domain Description: PRK14830 Location: 2934-3660 bp Feature: domain Description: PRK14 830 Location: 2934 -3660 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Creatinase_N (pfam01321), APP_MetAP (cl00279), PRK14830 (undecaprenyl pyrophosphate synthase; Provisional), RVT-GII, GIIM (pfam08388)

Seq: DHPU01000083.1 TPA_asm: Peptococcaceae bacterium UBA5356 UBA5356_contig_817, whole genome shotgun sequence (14748 bp)
Overview 1 RT 1: 1745-5301 bp Neighborhood of RT #1 [1745, 5360] DUF86 NT_KNTase_like RVT-DGRs DUF1016_N YhcG_C Feature: gene Location: 1745-2020 bp Feature: domain Description: DUF86 Location: 1850-2000 bp Feature: domain Description: DUF86 Location: 185 0-2000 bp Feature: gene Location: 2552-2875 bp Feature: domain Description: NT_KNTase_like Location: 2573-2864 bp Feature: domain Description: NT_KNTase_like Location: 25 73-2864 bp Feature: gene Location: 3000-3848 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3006-3600 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3006-3600 bp Feature: gene Location: 3947-4138 bp Feature: gene Location: 4296-5360 bp Feature: domain Description: DUF1016_N Location: 4365-4758 bp Feature: domain Description: DUF1016_N Location: 4365 -475 8 bp Feature: domain Description: YhcG_C Location: 4842-5301 bp Feature: domain Description: YhcG_C Location: 4842-5 301 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF86 (pfam01934), NT_KNTase_like (cd05403), RVT-DGRs, DUF1016_N (pfam17761), YhcG_C