myRT

myRT report for GCA_002410715.1_ASM241071v1

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Seq: DHOG01000195.1 TPA_asm: Ruminococcaceae bacterium UBA5396 UBA5396_contig_27171, whole genome shotgun sequence (4132 bp)
Overview 1 RT 1: 37-2443 bp Neighborhood of RT #1 [37, 2443] RVT-GII GIIM Feature: gene Location: 37-1452 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 385-1003 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 385-1 003 bp Feature: domain Description: GIIM Note: maturase Location: 1057-1279 bp Feature: domain Description: GIIM Note: maturase Location: 1 057-1 279 bp Feature: gene Location: 1643-1816 bp Feature: gene Location: 2213-2443 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: DHOG01000034.1 TPA_asm: Ruminococcaceae bacterium UBA5396 UBA5396_contig_29267, whole genome shotgun sequence (7014 bp)
Overview 1 RT 1: 3-2405 bp Neighborhood of RT #1 [3, 2668] RVT-DGRs RVT-DGRs GH25_LytC-like Feature: gene Location: 3-197 bp Feature: gene Location: 215-367 bp Feature: gene Location: 181-1527 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 394-580 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 394-580 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 781-1264 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 781-12 64 bp Feature: gene Location: 1642-1821 bp Feature: gene Location: 1661-2668 bp Feature: domain Description: GH25_LytC-like Location: 1832-2405 bp Feature: domain Description: GH2 5_LytC-like Location: 1832 -2 405 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GH25_LytC-like (cd06414), RVT-DGRs

Seq: DHOG01000197.1 TPA_asm: Ruminococcaceae bacterium UBA5396 UBA5396_contig_40455, whole genome shotgun sequence (9526 bp)
Overview 1 RT 1: 321-5346 bp Neighborhood of RT #1 [321, 5346] DUF2829 GH25_LytC-like RVT-DGRs Feature: gene Location: 321-671 bp Feature: domain Description: DUF2829 Location: 441-666 bp Feature: domain Description: DUF2829 Location: 441-666 bp Feature: gene Location: 987-2129 bp Feature: domain Description: GH25_LytC-like Location: 1068-1653 bp Feature: domain Description: GH25_LytC-like Location: 1068-1653 bp Feature: gene Location: 2145-3215 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2355-3006 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 23 55-3 006 bp Feature: gene Location: 3267-3836 bp Feature: gene Location: 4393-5346 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, DUF2829 (pfam11195), GH25_LytC-like (cd06414)

Seq: DHOG01000015.1 TPA_asm: Ruminococcaceae bacterium UBA5396 UBA5396_contig_42805, whole genome shotgun sequence (3365 bp)
Overview 1 RT 1: 1-3360 bp Neighborhood of RT #1 [1, 3362] FN3 RVT-DGRs RVT-DGRs Feature: gene Location: 1-2004 bp Feature: domain Description: FN3 Location: 1429-1702 bp Feature: domain Description: FN3 Location: 14 29-1702 bp Feature: gene Location: 2337-2705 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2340-2496 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 234 0-24 96 bp Feature: gene Location: 2850-3362 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3063-3360 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3063-3360 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FN3 (smart00060), RVT-DGRs

Seq: DHOG01000114.1 TPA_asm: Ruminococcaceae bacterium UBA5396 UBA5396_contig_5790, whole genome shotgun sequence (22227 bp)
Overview 1 RT 1: 2253-7072 bp Neighborhood of RT #1 [2253, 7191] HTH_XRE RVT-GII Intron_maturas2 RMtype1_S_SonII-TRD2-CR2_like COG0610 Feature: gene Location: 2253-2486 bp Feature: domain Description: HTH_XRE Location: 2298-2442 bp Feature: domain Description: HTH_XRE Location: 2298-2442 bp Feature: gene Location: 2557-2778 bp Feature: gene Location: 3039-4157 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3249-3444 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3249-3444 bp Feature: domain Description: Intron_maturas2 Location: 3510-3822 bp Feature: domain Description: Intron_maturas2 Location: 35 10-3822 bp Feature: gene Location: 4392-4649 bp Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 4401-4584 bp Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 4401-45 84 bp Feature: gene Location: 4663-7191 bp Feature: domain Description: COG0610 Location: 4699-7072 bp Feature: domain Description: COG0610 Location: 4699-7072 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-GII, Intron_maturas2 (pfam01348), RMtype1_S_SonII-TRD2-CR2_like (cd17246), COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases )