myRT

myRT report for GCA_002410865.1_ASM241086v1

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Seq: DHOW01000135.1 TPA_asm: Syntrophomonas sp. UBA5380 UBA5380_contig_1510, whole genome shotgun sequence (21305 bp)
Overview 1 RT 1: 6910-11407 bp Neighborhood of RT #1 [6910, 11412] UbiE RVT_N RVT-GII GIIM PHA02517 InsE Feature: gene Location: 6910-7596 bp Feature: domain Description: UbiE Location: 6919-7342 bp Feature: domain Description: UbiE Location: 691 9-7342 bp Feature: gene Location: 7844-8017 bp Feature: gene Location: 8505-9986 bp Feature: RT Description: RVT_N Location: 8577-8817 bp Feature: RT Description: RVT_N Location: 8577-881 7 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8868-9525 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8868-9525 bp Feature: domain Description: GIIM Note: maturase Location: 9576-9813 bp Feature: domain Description: GIIM Note: maturase Location: 9576-981 3 bp Feature: gene Location: 10514-11092 bp Feature: domain Description: PHA02517 Location: 10547-11072 bp Feature: domain Description: PHA0251 7 Location: 1 0547-1 1 072 bp Feature: gene Location: 11122-11412 bp Feature: domain Description: InsE Location: 11143-11407 bp Feature: domain Description: InsE Location: 1 1 1 43-1 1 407 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), UbiE (COG2226), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: DHOW01000074.1 TPA_asm: Syntrophomonas sp. UBA5380 UBA5380_contig_4359, whole genome shotgun sequence (22584 bp)
Overview 1 RT 1: 1240-7549 bp Neighborhood of RT #1 [1240, 7602] RVT-GII GIIM lysA NrnA CBS_pair_DHH_polyA_Pol_assoc PcnB Feature: gene Location: 1240-1383 bp Feature: gene Location: 1444-1692 bp Feature: gene Location: 1847-3112 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2060-2681 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 060-2 681 bp Feature: domain Description: GIIM Note: maturase Location: 2723-2954 bp Feature: domain Description: GIIM Note: maturase Location: 2 72 3-2 954 bp Feature: gene Location: 3301-4626 bp Feature: domain Description: lysA Location: 3337-4597 bp Feature: domain Description: lysA Location: 3337-4597 bp Feature: gene Location: 4966-7602 bp Feature: domain Description: NrnA Location: 4975-5881 bp Feature: domain Description: NrnA Location: 4975-5881 bp Feature: domain Description: CBS_pair_DHH_polyA_Pol_assoc Location: 5911-6235 bp Feature: domain Description: CBS_pair_DHH_polyA_Pol_assoc Location: 5911-62 35 bp Feature: domain Description: PcnB Location: 6355-7549 bp Feature: domain Description: PcnB Location: 6355-7549 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), lysA (TIGR01048), NrnA (COG0618), CBS_pair_DHH_polyA_Pol_assoc (cd17772), PcnB (COG0617)

Seq: DHOW01000194.1 TPA_asm: Syntrophomonas sp. UBA5380 UBA5380_contig_4392, whole genome shotgun sequence (5928 bp)
Overview 1 RT 1: 29-5906 bp Neighborhood of RT #1 [29, 5926] MATE_SpoVB_like IstB_IS21 RVT-GII GIIM RVT_N RVT-GII HTH_28 HTH_28 HTH_28 PHA02517 Feature: gene Location: 29-1645 bp Feature: domain Description: MATE_SpoVB_like Location: 137-1430 bp Feature: domain Description: MATE_SpoVB_like Location: 13 7-143 0 bp Feature: gene Location: 1782-2354 bp Feature: domain Description: IstB_IS21 Location: 1815-2235 bp Feature: domain Description: IstB_IS21 Location: 1815-223 5 bp Feature: gene Location: 2606-3508 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2609-2990 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2609-2990 bp Feature: domain Description: GIIM Note: maturase Location: 3041-3278 bp Feature: domain Description: GIIM Note: maturase Location: 3 041-3 278 bp Feature: gene Location: 3517-4200 bp Feature: RT Description: RVT_N Location: 3655-3895 bp Feature: RT Description: RVT_N Location: 3 655-3 895 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3943-4198 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 943 -4198 bp Feature: gene Location: 4667-5926 bp Feature: domain Description: HTH_28 Location: 4673-4820 bp Feature: domain Description: HTH_28 Location: 4673 -4820 bp Feature: domain Description: HTH_28 Location: 4850-4940 bp Feature: domain Description: HTH_28 Location: 4850-4940 bp Feature: domain Description: HTH_28 Location: 5030-5129 bp Feature: domain Description: HTH_28 Location: 503 0-5129 bp Feature: domain Description: PHA02517 Location: 5393-5906 bp Feature: domain Description: PHA02517 Location: 53 93 -5906 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IstB_IS21 (pfam01695), RVT-GII, GIIM (pfam08388), MATE_SpoVB_like (cd13124), RVT_N (pfam13655), HTH_28 (pfam13518), PHA02517 (putative transposase OrfB; Reviewed)

Seq: DHOW01000177.1 TPA_asm: Syntrophomonas sp. UBA5380 UBA5380_contig_5527, whole genome shotgun sequence (14927 bp)
Overview 1 RT 1: 7307-13463 bp Neighborhood of RT #1 [7307, 13463] ACH1 RVT-GII GIIM FC-FACS_FadD_like Feature: gene Location: 7307-7465 bp Feature: gene Location: 7748-9130 bp Feature: domain Description: ACH1 Location: 7796-9110 bp Feature: domain Description: ACH1 Location: 7796-9110 bp Feature: gene Location: 10177-11187 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10183-10750 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10183-10750 bp Feature: domain Description: GIIM Note: maturase Location: 10801-11032 bp Feature: domain Description: GIIM Note: maturase Location: 10801-11032 bp Feature: gene Location: 11492-13210 bp Feature: domain Description: FC-FACS_FadD_like Location: 11612-13115 bp Feature: domain Description: FC-FACS_FadD_like Location: 11612-13115 bp Feature: gene Location: 13254-13463 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), FC-FACS_FadD_like (cd05936), ACH1 (COG0427)