myRT

myRT report for GCA_002411675.1_ASM241167v1

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Seq: NXHH01000054.1 Klebsiella pneumoniae strain 20 NODE_54_length_1892_cov_703.498, whole genome shotgun sequence (1892 bp)
Overview 1 RT 1: 1-1442 bp Neighborhood of RT #1 [1, 1834] RVT-GII Feature: gene Location: 1-217 bp Feature: gene Location: 350-1834 bp Ori: PCM63720.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 752-1442 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 752-1 442 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: NXHH01000003.1 Klebsiella pneumoniae strain 20 NODE_3_length_377058_cov_111.818, whole genome shotgun sequence (377058 bp)
Overview 1 RT 1: 37762-41701 bp Neighborhood of RT #1 [37762, 41909] Psu RVT-UG17 SLATT_5 PRK09692 PRK09692 Feature: gene Location: 37762-38311 bp Feature: domain Description: Psu Location: 37780-38161 bp Feature: domain Description: Psu Location: 37780-38161 bp Feature: gene Location: 38321-38456 bp Feature: gene Location: 38638-40047 bp Ori: PCM67589.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 38875-39487 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 38875-39487 bp Feature: gene Location: 40242-40883 bp Ori: PCM67883.1 Feature: domain Description: SLATT_5 Location: 40245-40848 bp Feature: domain Description: SLATT_5 Location: 402 45-40848 bp Feature: gene Location: 40936-41909 bp Feature: domain Description: PRK09692 Location: 40945-41308 bp Feature: domain Description: PRK09692 Location: 40945-41308 bp Feature: domain Description: PRK09692 Location: 41329-41701 bp Feature: domain Description: PRK09692 Location: 4132 9-41701 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Psu (pfam07455), RVT-UG17, SLATT_5 (pfam18160), PRK09692 (Integrase; provisional)

Seq: NXHH01000041.1 Klebsiella pneumoniae strain 20 NODE_41_length_6773_cov_116.428, whole genome shotgun sequence (6773 bp)
Overview 1 RT 1: 2919-6006 bp Neighborhood of RT #1 [2919, 6415] PHA02517 RVT-GII GIIM InsE Feature: gene Location: 2919-3020 bp Feature: gene Location: 2986-3468 bp Feature: domain Description: PHA02517 Location: 3004-3442 bp Feature: domain Description: PHA02517 Location: 3 004-3 442 bp Feature: gene Location: 3537-5060 bp Ori: PCM63764.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3810-4542 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 810-4542 bp Feature: domain Description: GIIM Note: maturase Location: 4617-4815 bp Feature: domain Description: GIIM Note: maturase Location: 4617-4815 bp Feature: gene Location: 5354-5758 bp Feature: gene Location: 5709-6415 bp Feature: domain Description: InsE Location: 5733-6006 bp Feature: domain Description: InsE Location: 573 3 -6006 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963)

Seq: NXHH01000028.1 Klebsiella pneumoniae strain 20 NODE_28_length_40183_cov_70.4546, whole genome shotgun sequence (40183 bp)
Overview 1 RT 1: 7375-12508 bp Neighborhood of RT #1 [7375, 12851] TIGR02646 COG3950 RVT-Retrons PRK09692 Feature: gene Location: 7375-8016 bp Ori: PCM64056.1 Feature: domain Description: TIGR02646 Location: 7477-7852 bp Feature: domain Description: TIGR0264 6 Location: 74 77-7852 bp Feature: gene Location: 8001-9593 bp Ori: PCM64057.1 Feature: domain Description: COG3950 Location: 8181-9402 bp Feature: domain Description: COG3950 Location: 8181-94 02 bp Feature: gene Location: 9571-10536 bp Ori: PCM64058.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9679-10276 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9679-10276 bp Feature: gene Location: 10962-11603 bp Feature: gene Location: 11605-12851 bp Feature: domain Description: PRK09692 Location: 11614-12508 bp Feature: domain Description: PRK09692 Location: 11614 -12508 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR02646 (TIGR02646 family protein), COG3950 (Predicted ATP-binding protein involved in virulence ), RVT-Retrons, PRK09692 (Integrase; provisional)