myRT

myRT report for GCA_002411715.1_ASM241171v1

Download annotations/find similar RTs

Seq: NXHJ01000006.1 Klebsiella pneumoniae strain 183 NODE_6_length_279783_cov_71.6559, whole genome shotgun sequence (279783 bp)
Overview 1 RT 1: 274855-279783 bp Neighborhood of RT #1 [274855, 279783] SLATT_5 RVT-UG17 CoiA Feature: gene Location: 274855-275535 bp Feature: gene Location: 276380-276919 bp Ori: PCM77216.1 Feature: domain Description: SLATT_5 Location: 276386-276899 bp Feature: domain Description: SLATT_5 Location: 276386-276899 bp Feature: gene Location: 276909-278279 bp Ori: PCM77217.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 277137-277743 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 2771 37-277743 bp Feature: gene Location: 278653-279357 bp Ori: PCM77218.1 Feature: domain Description: CoiA Location: 278710-279040 bp Feature: domain Description: CoiA Location: 27871 0-279040 bp Feature: gene Location: 279684-279783 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLATT_5 (pfam18160), RVT-UG17, CoiA (pfam06054)

Seq: NXHJ01000027.1 Klebsiella pneumoniae strain 183 NODE_27_length_37042_cov_79.5241, whole genome shotgun sequence (37042 bp)
Overview 1 RT 1: 7174-11439 bp Neighborhood of RT #1 [7174, 11444] D PRK09678 RVT-UG11 SmpB PRK10724 Feature: gene Location: 7174-8274 bp Ori: PCM74475.1 Feature: domain Description: D Location: 7189-8260 bp Feature: domain Description: D Location: 7189-82 60 bp Feature: gene Location: 8365-8583 bp Ori: PCM74476.1 Feature: domain Description: PRK09678 Location: 8368-8566 bp Feature: domain Description: PRK09678 Location: 8368-8566 bp Feature: gene Location: 8987-9760 bp Ori: PCM74477.1 Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 9122-9575 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 912 2 -9575 bp Feature: gene Location: 10375-10857 bp Ori: PCM74478.1 Gene: smpB Feature: domain Description: SmpB Location: 10405-10849 bp Feature: domain Description: SmpB Location: 10405-10849 bp Feature: gene Location: 10968-11444 bp Ori: PCM74479.1 Feature: domain Description: PRK10724 Location: 10974-11439 bp Feature: domain Description: PRK1072 4 Location: 10974-11439 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT D (PHA02561), PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-UG11, SmpB (pfam01668), PRK10724 (type II toxin-antitoxin system RatA family toxin)

Seq: NXHJ01000061.1 Klebsiella pneumoniae strain 183 NODE_61_length_1773_cov_231.249, whole genome shotgun sequence (1773 bp)
Overview 1 RT 1: 1-1442 bp Neighborhood of RT #1 [1, 1773] RVT-GII Feature: gene Location: 1-217 bp Feature: gene Location: 350-1773 bp Ori: PCM74065.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 752-1442 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 752-1442 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: NXHJ01000003.1 Klebsiella pneumoniae strain 183 NODE_3_length_474297_cov_77.2636, whole genome shotgun sequence (474297 bp)
Overview 1 RT 1: 97293-102871 bp Neighborhood of RT #1 [97293, 103047] AAA_15 RVT-Retrons Nuc_deoxyrib_tr Feature: gene Location: 97293-97523 bp Feature: gene Location: 98406-100682 bp Ori: PCM78001.1 Feature: domain Description: AAA_15 Location: 98439-99447 bp Feature: domain Description: AAA_15 Location: 984 39-994 4 7 bp Feature: gene Location: 100797-101897 bp Ori: PCM78002.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 100977-101511 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 100977-101511 bp Feature: gene Location: 102378-102533 bp Feature: gene Location: 102553-103047 bp Ori: PCM78307.1 Feature: domain Description: Nuc_deoxyrib_tr Location: 102697-102871 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 102697-102871 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_15 (pfam13175), RVT-Retrons, Nuc_deoxyrib_tr (pfam05014)