myRT

myRT report for GCA_002412335.2_ASM241233v2

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Seq: NXIB02000015.1 Tychonema bourrellyi FEM_GT703 scaffold15_size39238, whole genome shotgun sequence (39238 bp)
Overview 1 RT 1: 13035-19701 bp Neighborhood of RT #1 [13035, 19823] CobD_Cbib PyrR RVT_N RVT-GII GIIM HNHc TlyC Feature: gene Location: 13035-14189 bp Ori: PHX56633.1 Feature: domain Description: CobD_Cbib Location: 13062-14118 bp Feature: domain Description: CobD_Cbib Location: 1 3062-1 41 1 8 bp Feature: gene Location: 14247-14780 bp Ori: PHX56634.1 Feature: domain Description: PyrR Location: 14259-14772 bp Feature: domain Description: PyrR Location: 1 4259-1 4772 bp Feature: gene Location: 15017-16741 bp Ori: PHX56635.1 Gene: ltrA Feature: domain Description: RVT_N Location: 15044-15290 bp Feature: domain Description: RVT_N Location: 1 5044-1 5290 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15332-16022 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 5332-1 6022 bp Feature: domain Description: GIIM Note: maturase Location: 16121-16334 bp Feature: domain Description: GIIM Note: maturase Location: 1 61 21 -1 6334 bp Feature: domain Description: HNHc Note: nucleases Location: 16565-16706 bp Feature: domain Description: HNHc Note: nucleases Location: 1 6565-1 6706 bp Feature: gene Location: 17471-18157 bp Feature: gene Location: 18360-19823 bp Ori: PHX56637.1 Feature: domain Description: TlyC Location: 18396-19701 bp Feature: domain Description: TlyC Location: 1 8396-1 9701 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CobD_Cbib (pfam03186), PyrR (COG2065), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), TlyC (COG1253)

Seq: NXIB02000028.1 Tychonema bourrellyi FEM_GT703 scaffold28_size31576, whole genome shotgun sequence (31576 bp)
Overview 1 RT 1: 14775-19023 bp Neighborhood of RT #1 [14775, 19023] DUF433 UvrD_C RVT-UG25 Feature: gene Location: 14775-14993 bp Ori: PHX56193.1 Feature: domain Description: DUF433 Location: 14793-14955 bp Feature: domain Description: DUF433 Location: 14793-14955 bp Feature: gene Location: 14957-15136 bp Ori: PHX56194.1 Feature: domain Description: UvrD_C Location: 14969-15065 bp Feature: domain Description: UvrD_C Location: 14969-15065 bp Feature: gene Location: 15133-18189 bp Ori: PHX56195.1 Feature: RT Description: RVT-UG25 Note: UG25 RT Location: 16627-17023 bp Feature: RT Description: RVT-UG2 5 Note: UG2 5 RT Location: 1662 7-1702 3 bp Feature: gene Location: 18329-18583 bp Feature: gene Location: 18640-19023 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF433 (pfam04255), UvrD_C (pfam13361), RVT-UG25

Seq: NXIB02000006.1 Tychonema bourrellyi FEM_GT703 scaffold6_size51685, whole genome shotgun sequence (51685 bp)
Overview 1 RT 1: 42664-49807 bp Neighborhood of RT #1 [42664, 49878] PLN02643 RVT_N RVT-GII GIIM McrA Metallophos tol_pal_ybgF TPR_6 tol_pal_ybgF tol_pal_ybgF Slt70_like Feature: gene Location: 42664-42930 bp Feature: domain Description: PLN02643 Location: 42667-42907 bp Feature: domain Description: PLN02643 Location: 42667-42907 bp Feature: gene Location: 43045-43329 bp Feature: gene Location: 43485-44720 bp Ori: PHX57093.1 Feature: domain Description: RVT_N Location: 43527-43773 bp Feature: domain Description: RVT_N Location: 43 527-43 773 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43815-43914 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43 815-43 914 bp Feature: domain Description: GIIM Note: maturase Location: 44115-44328 bp Feature: domain Description: GIIM Note: maturase Location: 44115-443 28 bp Feature: domain Description: McrA Location: 44424-44688 bp Feature: domain Description: McrA Location: 44424-44688 bp Feature: gene Location: 45656-47437 bp Ori: PHX57094.1 Feature: domain Description: Metallophos Location: 46160-47096 bp Feature: domain Description: Metallophos Location: 46160-47096 bp Feature: gene Location: 47683-49878 bp Ori: PHX57095.1 Feature: domain Description: tol_pal_ybgF Location: 47956-48196 bp Feature: domain Description: tol_pal_ybgF Location: 47956-48196 bp Feature: domain Description: TPR_6 Location: 48487-48577 bp Feature: domain Description: TPR_6 Location: 48487-48577 bp Feature: domain Description: tol_pal_ybgF Location: 48619-48793 bp Feature: domain Description: tol_pal_ybgF Location: 48619-48793 bp Feature: domain Description: tol_pal_ybgF Location: 48814-49009 bp Feature: domain Description: tol_pal_ybgF Location: 48814-49009 bp Feature: domain Description: Slt70_like Location: 49369-49807 bp Feature: domain Description: Slt70_like Location: 493 69-49807 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PLN02643 (ADP-glucose phosphorylase), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), Metallophos (pfam00149), tol_pal_ybgF (TIGR02795), TPR_6 (pfam13174), Slt70_like

Seq: NXIB02000033.1 Tychonema bourrellyi FEM_GT703 scaffold33_size55322, whole genome shotgun sequence (55322 bp)
Overview 1 RT 1: 16463-20998 bp Neighborhood of RT #1 [16463, 21099] DUF1824 CE4_NodB_like_5s_6s RVT-Retrons Rnc PIN_LabA-like_N_1 Feature: gene Location: 16463-16888 bp Ori: PHX56010.1 Feature: domain Description: DUF1824 Location: 16511-16883 bp Feature: domain Description: DUF1824 Location: 16511-16883 bp Feature: gene Location: 17186-18121 bp Ori: PHX56011.1 Feature: domain Description: CE4_NodB_like_5s_6s Location: 17558-18050 bp Feature: domain Description: CE4 _NodB_like_5s_6s Location: 17558-18050 bp Feature: gene Location: 18251-19648 bp Ori: PHX56012.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 18797-19415 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 18797-194 15 bp Feature: gene Location: 19739-20452 bp Ori: PHX56013.1 Gene: rnc Feature: domain Description: Rnc Location: 19784-20438 bp Feature: domain Description: Rnc Location: 19784 -204 38 bp Feature: gene Location: 20590-21099 bp Ori: PHX56014.1 Feature: domain Description: PIN_LabA-like_N_1 Location: 20647-20998 bp Feature: domain Description: PIN_LabA-like_N_1 Location: 2064 7-20998 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1824 (pfam08854), CE4_NodB_like_5s_6s (cd10918), RVT-Retrons, Rnc (COG0571), PIN_LabA-like_N_1 (cd11297)

Seq: NXIB02000020.1 Tychonema bourrellyi FEM_GT703 scaffold20_size56829, whole genome shotgun sequence (56829 bp)
Overview 1 RT 1: 14783-21350 bp Neighborhood of RT #1 [14783, 21535] PLN02348 RVT_N RVT-GII GIIM McrA CpcD PLN03115 Uma2 Feature: gene Location: 14783-15787 bp Ori: PHX56426.1 Feature: domain Description: PLN02348 Location: 14792-15776 bp Feature: domain Description: PLN02348 Location: 14792-15 776 bp Feature: gene Location: 15974-16189 bp Feature: gene Location: 17028-18701 bp Ori: PHX56427.1 Gene: ltrA Feature: domain Description: RVT_N Location: 17070-17316 bp Feature: domain Description: RVT_N Location: 17070-17316 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17358-18015 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1735 8-18015 bp Feature: domain Description: GIIM Note: maturase Location: 18114-18327 bp Feature: domain Description: GIIM Note: maturase Location: 18114-18327 bp Feature: domain Description: McrA Location: 18423-18687 bp Feature: domain Description: McrA Location: 18423-18687 bp Feature: gene Location: 19076-20281 bp Ori: PHX56428.1 Feature: domain Description: CpcD Location: 19127-19298 bp Feature: domain Description: CpcD Location: 19127-19298 bp Feature: domain Description: PLN03115 Location: 19331-20279 bp Feature: domain Description: PLN03115 Location: 19331-20279 bp Feature: gene Location: 20801-21535 bp Ori: PHX56429.1 Feature: domain Description: Uma2 Location: 20834-21350 bp Feature: domain Description: Uma2 Location: 20834-2135 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PLN02348 (phosphoribulokinase), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), CpcD (smart01094), PLN03115 (ferredoxin--NADP(+) reductase; Provisional), Uma2 (pfam05685)