myRT

myRT report for GCA_002416135.1_ASM241613v1

Download annotations/find similar RTs

Seq: DIBW01000008.1 TPA_asm: Idiomarina abyssalis isolate UBA5042 UBA5042_contig_116, whole genome shotgun sequence (146284 bp)
Overview 1 RT 1: 47383-50264 bp Neighborhood of RT #1 [47383, 50386] RVT-GII GIIM PBP2_CysL_like LysR Feature: gene Location: 47383-47886 bp Feature: gene Location: 47770-47922 bp Feature: gene Location: 48096-49433 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48375-48996 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48375-48996 bp Feature: domain Description: GIIM Note: maturase Location: 49044-49263 bp Feature: domain Description: GIIM Note: maturase Location: 49044-49263 bp Feature: gene Location: 49519-49758 bp Feature: domain Description: PBP2_CysL_like Location: 49540-49738 bp Feature: domain Description: PBP2_CysL_like Location: 49540-49738 bp Feature: gene Location: 49715-50386 bp Feature: domain Description: LysR Location: 49721-50264 bp Feature: domain Description: LysR Location: 49721 -50264 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PBP2_CysL_like (cd08420), LysR (COG0583)

Seq: DIBW01000001.1 TPA_asm: Idiomarina abyssalis isolate UBA5042 UBA5042_contig_25, whole genome shotgun sequence (730352 bp)
Overview 1 RT 1: 243014-251474 bp Neighborhood of RT #1 [243014, 251860] PRK09692 RVT-UG8 RVT-UG3 DUF45 COG0610 Feature: gene Location: 243014-244273 bp Feature: domain Description: PRK09692 Location: 243059-244259 bp Feature: domain Description: PRK09692 Location: 2 43059-2 442 59 bp Feature: gene Location: 244322-244537 bp Feature: gene Location: 244696-246591 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 245194-245632 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 2 45194-2 45632 bp Feature: gene Location: 246584-247762 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 246869-247331 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 2 46869-2 47331 bp Feature: gene Location: 247790-248575 bp Feature: domain Description: DUF45 Location: 247919-248546 bp Feature: domain Description: DUF45 Location: 2 47919-2 48546 bp Feature: gene Location: 248579-251860 bp Feature: domain Description: COG0610 Location: 248609-251474 bp Feature: domain Description: COG0610 Location: 2 48609-2 51474 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), RVT-UG8, RVT-UG3, DUF45 (pfam01863), COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases )