myRT

myRT report for GCA_002416705.1_ASM241670v1

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Seq: NXJA01000014.1 Klebsiella pneumoniae strain ST-15:E041 NODE_14_length_116905_cov_37.6995, whole genome shotgun sequence (116905 bp)
Overview 1 RT 1: 689-7542 bp Neighborhood of RT #1 [689, 7559] INT_P4_C Integrase_1 RVT-UG4 FimD FimC Feature: gene Location: 689-1354 bp Feature: domain Description: INT_P4_C Location: 794-1352 bp Feature: domain Description: INT_P4_C Location: 794-1 352 bp Feature: gene Location: 1615-2055 bp Feature: domain Description: Integrase_1 Location: 1621-1837 bp Feature: domain Description: Integrase_1 Location: 1 621 -1 837 bp Feature: gene Location: 2112-4190 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2520-2964 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2520-2964 bp Feature: gene Location: 4190-6799 bp Feature: domain Description: FimD Location: 4247-6788 bp Feature: domain Description: FimD Location: 4247-6788 bp Feature: gene Location: 6831-7559 bp Feature: domain Description: FimC Location: 6879-7542 bp Feature: domain Description: FimC Location: 6879-7542 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_P4_C (cd00801), Integrase_1 (pfam12835), RVT-UG4, FimD (COG3188), FimC (COG3121)

Seq: NXJA01000062.1 Klebsiella pneumoniae strain ST-15:E041 NODE_62_length_20878_cov_51.8407, whole genome shotgun sequence (20878 bp)
Overview 1 RT 1: 8559-11896 bp Neighborhood of RT #1 [8559, 11961] PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 8559-8798 bp Feature: gene Location: 8861-9316 bp Feature: domain Description: PHA02517 Location: 8870-9290 bp Feature: domain Description: PHA02 517 Location: 8870-92 90 bp Feature: gene Location: 9412-10935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9685-10417 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9685-10417 bp Feature: domain Description: GIIM Note: maturase Location: 10492-10690 bp Feature: domain Description: GIIM Note: maturase Location: 10492 -10690 bp Feature: gene Location: 10889-11314 bp Feature: gene Location: 11527-11961 bp Feature: domain Description: PHA02517 Location: 11629-11896 bp Feature: domain Description: PHA02 517 Location: 1162 9-11896 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: NXJA01000096.1 Klebsiella pneumoniae strain ST-15:E041 NODE_96_length_3371_cov_95.3935, whole genome shotgun sequence (3371 bp)
Overview 1 RT 1: 1-3332 bp Neighborhood of RT #1 [1, 3332] RVT-GII INT_Cre_C Feature: gene Location: 1-243 bp Feature: gene Location: 318-1616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 645-1335 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 645-13 3 5 bp Feature: gene Location: 1813-2949 bp Feature: domain Description: INT_Cre_C Location: 2236-2890 bp Feature: domain Description: INT_Cre_C Location: 223 6-2890 bp Feature: gene Location: 3015-3332 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, INT_Cre_C (cd00799)