myRT

myRT report for GCA_002416915.1_ASM241691v1

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Seq: NXIZ01000106.1 Escherichia coli strain E003 NODE_106_length_2942_cov_188.098, whole genome shotgun sequence (2942 bp)
Overview 1 RT 1: 93-2819 bp Neighborhood of RT #1 [93, 2819] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 93-1760 bp Feature: domain Description: RVT_N Location: 141-378 bp Feature: domain Description: RVT_N Location: 1 41 -378 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 429-1071 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 429-1 071 bp Feature: domain Description: GIIM Note: maturase Location: 1122-1356 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 22-1 356 bp Feature: domain Description: HNHc Note: nucleases Location: 1566-1725 bp Feature: domain Description: HNHc Note: nucleases Location: 1 566-1 725 bp Feature: gene Location: 2040-2222 bp Feature: gene Location: 2484-2819 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: NXIZ01000012.1 Escherichia coli strain E003 NODE_12_length_115633_cov_53.2605, whole genome shotgun sequence (115633 bp)
Overview 1 RT 1: 55236-64139 bp Neighborhood of RT #1 [55236, 64141] prfC SLATT_5 RVT-UG17 phage_tail_N 7tmA_amine_R-like Peptidase_S74 APC_N_CC Ail_Lom Feature: gene Location: 55236-56822 bp Feature: domain Description: prfC Location: 55254-56820 bp Feature: domain Description: prfC Location: 552 54-5682 0 bp Feature: gene Location: 57353-58057 bp Feature: domain Description: SLATT_5 Location: 57515-58025 bp Feature: domain Description: SLATT_5 Location: 57515-5802 5 bp Feature: gene Location: 58035-59405 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 58263-58869 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 582 63-58869 bp Feature: gene Location: 59701-63477 bp Feature: domain Description: phage_tail_N Location: 59704-60103 bp Feature: domain Description: phage_tail_N Location: 59704-60103 bp Feature: domain Description: 7tmA_amine_R-like Location: 60520-62500 bp Feature: domain Description: 7tmA_amine_R-like Location: 6052 0-62 500 bp Feature: domain Description: Peptidase_S74 Location: 63046-63193 bp Feature: domain Description: Peptidase_S74 Location: 63046-63193 bp Feature: domain Description: APC_N_CC Location: 63346-63469 bp Feature: domain Description: APC_N_CC Location: 63346-63469 bp Feature: gene Location: 63542-64141 bp Feature: domain Description: Ail_Lom Location: 63545-64139 bp Feature: domain Description: Ail_Lom Location: 63545-64139 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT prfC (TIGR00503), SLATT_5 (pfam18160), RVT-UG17, phage_tail_N (pfam08400), 7tmA_amine_R-like (cd14967), Peptidase_S74 (pfam13884), APC_N_CC (pfam16689), Ail_Lom (pfam06316)

Seq: NXIZ01000190.1 Escherichia coli strain E003 NODE_193_length_608_cov_0.671518, whole genome shotgun sequence (608 bp)
Overview 1 RT 1: 3-489 bp Neighborhood of RT #1 [3, 605] RVT-GII Feature: gene Location: 3-605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-489 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-489 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: NXIZ01000085.1 Escherichia coli strain E003 NODE_85_length_8375_cov_90.8823, whole genome shotgun sequence (8375 bp)
Overview 1 RT 1: 603-4317 bp Neighborhood of RT #1 [603, 4346] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc HTH_23 InsE TnpB_IS66 Feature: gene Location: 603-836 bp Feature: domain Description: DUF905 Location: 633-831 bp Feature: domain Description: DUF905 Location: 633-831 bp Feature: gene Location: 894-1334 bp Feature: domain Description: PRK13732 Location: 900-1332 bp Feature: domain Description: PRK13732 Location: 900-1332 bp Feature: gene Location: 1529-3211 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1577-2408 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1577-24 08 bp Feature: domain Description: Intron_maturas2 Location: 2522-2780 bp Feature: domain Description: Intron_maturas2 Location: 2522-2780 bp Feature: domain Description: HNHc Note: nucleases Location: 2954-3116 bp Feature: domain Description: HNHc Note: nucleases Location: 2954 -3116 bp Feature: gene Location: 3322-3999 bp Feature: domain Description: HTH_23 Location: 3382-3493 bp Feature: domain Description: HTH_23 Location: 3382-34 93 bp Feature: domain Description: InsE Location: 3622-3979 bp Feature: domain Description: InsE Location: 3622-3979 bp Feature: gene Location: 3999-4346 bp Feature: domain Description: TnpB_IS66 Location: 4026-4317 bp Feature: domain Description: TnpB_IS66 Location: 4 026-4 317 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), HTH_23 (pfam13384), InsE (COG2963), TnpB_IS66 (pfam05717)

Seq: NXIZ01000086.1 Escherichia coli strain E003 NODE_86_length_8140_cov_59.6806, whole genome shotgun sequence (8140 bp)
Overview 1 RT 1: 1009-4898 bp Neighborhood of RT #1 [1009, 4903] RVT-GII RVT-GII GIIM LacI PBP1_GntR Feature: gene Location: 1009-1323 bp Feature: gene Location: 1721-1918 bp Feature: gene Location: 2087-2521 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2279-2495 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2279-2495 bp Feature: gene Location: 2494-3147 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2497-2905 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2497-2905 bp Feature: domain Description: GIIM Note: maturase Location: 2953-3145 bp Feature: domain Description: GIIM Note: maturase Location: 295 3-3145 bp Feature: gene Location: 3523-3741 bp Feature: gene Location: 3872-4903 bp Feature: domain Description: LacI Location: 3914-4049 bp Feature: domain Description: LacI Location: 3914-4049 bp Feature: domain Description: PBP1_GntR Location: 4088-4898 bp Feature: domain Description: PBP1_GntR Location: 4088-4898 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), LacI (pfam00356), PBP1_GntR (cd01575)