myRT

myRT report for GCA_002417375.1_ASM241737v1

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Seq: NXJS01000013.1 Klebsiella pneumoniae strain ST-15:K087 NODE_13_length_120453_cov_159.888, whole genome shotgun sequence (120453 bp)
Overview 1 RT 1: 772-7625 bp Neighborhood of RT #1 [772, 7642] INT_P4_C Integrase_1 RVT-UG4 FimD FimC Feature: gene Location: 772-1437 bp Feature: domain Description: INT_P4_C Location: 877-1435 bp Feature: domain Description: INT_P4_C Location: 877-1 435 bp Feature: gene Location: 1698-2138 bp Feature: domain Description: Integrase_1 Location: 1704-1920 bp Feature: domain Description: Integrase_1 Location: 1 704-1 920 bp Feature: gene Location: 2195-4273 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2603-3047 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2603-3047 bp Feature: gene Location: 4273-6882 bp Feature: domain Description: FimD Location: 4330-6871 bp Feature: domain Description: FimD Location: 4330-6871 bp Feature: gene Location: 6914-7642 bp Feature: domain Description: FimC Location: 6962-7625 bp Feature: domain Description: FimC Location: 6962-7625 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_P4_C (cd00801), Integrase_1 (pfam12835), RVT-UG4, FimD (COG3188), FimC (COG3121)

Seq: NXJS01000062.1 Klebsiella pneumoniae strain ST-15:K087 NODE_62_length_4300_cov_196.565, whole genome shotgun sequence (4300 bp)
Overview 1 RT 1: 1993-3905 bp Neighborhood of RT #1 [1993, 4297] RVT-GII Feature: gene Location: 1993-2208 bp Feature: gene Location: 2475-3053 bp Feature: gene Location: 2939-4297 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3191-3905 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3191-3905 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: NXJS01000066.1 Klebsiella pneumoniae strain ST-15:K087 NODE_66_length_3348_cov_255.906, whole genome shotgun sequence (3348 bp)
Overview 1 RT 1: 2-3348 bp Neighborhood of RT #1 [2, 3347] RVT-GII PRK10276 umuC Feature: gene Location: 2-241 bp Feature: gene Location: 310-1797 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 715-1405 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 715-1405 bp Feature: gene Location: 1951-2634 bp Feature: domain Description: PRK10276 Location: 2254-2617 bp Feature: domain Description: PRK10276 Location: 2254-2617 bp Feature: gene Location: 2634-3347 bp Feature: domain Description: umuC Location: 2637-3348 bp Feature: domain Description: umuC Location: 263 7-3 3 48 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)

Seq: NXJS01000073.1 Klebsiella pneumoniae strain ST-15:K087 NODE_73_length_2958_cov_474.139, whole genome shotgun sequence (2958 bp)
Overview 1 RT 1: 2-2908 bp Neighborhood of RT #1 [2, 2908] RVT-GII GIIM PHA02517 Feature: gene Location: 2-418 bp Feature: gene Location: 712-2235 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 985-1717 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 985-1717 bp Feature: domain Description: GIIM Note: maturase Location: 1792-1990 bp Feature: domain Description: GIIM Note: maturase Location: 1792-1990 bp Feature: gene Location: 2400-2558 bp Feature: domain Description: PHA02517 Location: 2403-2523 bp Feature: domain Description: PHA02517 Location: 24 03-2523 bp Feature: gene Location: 2777-2908 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)