myRT

myRT report for GCA_002417735.1_ASM241773v1

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Seq: DICT01000001.1 TPA_asm: Firmicutes bacterium UBA5819 UBA5819_contig_2773, whole genome shotgun sequence (22397 bp)
Overview 1 RT 1: 7948-14793 bp Neighborhood of RT #1 [7948, 14793] OpuBA PBP2_ChoS PBP2_Opu_like_1 RVT-GII GIIM Feature: gene Location: 7948-9075 bp Feature: domain Description: OpuBA Location: 7951-9034 bp Feature: domain Description: OpuBA Location: 7951 -9034 bp Feature: gene Location: 9076-10653 bp Feature: domain Description: PBP2_ChoS Location: 9310-9652 bp Feature: domain Description: PBP2_ChoS Location: 931 0-9652 bp Feature: domain Description: PBP2_Opu_like_1 Location: 9844-10630 bp Feature: domain Description: PBP2_Opu_like_1 Location: 9844-1 0630 bp Feature: gene Location: 10986-12263 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11214-11817 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 21 4-1 1 81 7 bp Feature: domain Description: GIIM Note: maturase Location: 11874-12105 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 874-1 21 05 bp Feature: gene Location: 12507-13601 bp Feature: gene Location: 14539-14793 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PBP2_ChoS (cd13610), PBP2_Opu_like_1 (cd13609)

Seq: DICT01000031.1 TPA_asm: Firmicutes bacterium UBA5819 UBA5819_contig_278, whole genome shotgun sequence (118844 bp)
Overview 1 RT 1: 113913-118576 bp Neighborhood of RT #1 [113913, 118737] GT8_A4GalT_like COG5421 RVT-GII GIIM Feature: gene Location: 113913-114746 bp Feature: domain Description: GT8_A4GalT_like Location: 113928-114675 bp Feature: domain Description: GT8_A4GalT_like Location: 11392 8-114675 bp Feature: gene Location: 115026-116744 bp Feature: domain Description: COG5421 Location: 115542-116550 bp Feature: domain Description: COG542 1 Location: 115542 -116550 bp Feature: gene Location: 117313-118737 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 117676-118291 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 117676-1182 91 bp Feature: domain Description: GIIM Note: maturase Location: 118345-118576 bp Feature: domain Description: GIIM Note: maturase Location: 118345-118576 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GT8_A4GalT_like (cd04194), COG5421 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: DICT01000019.1 TPA_asm: Firmicutes bacterium UBA5819 UBA5819_contig_3447, whole genome shotgun sequence (5858 bp)
Overview 1 RT 1: 384-3436 bp Neighborhood of RT #1 [384, 3543] RVT-GII Transposase_20 DEDD_Tnp_IS110 Feature: gene Location: 384-1262 bp Feature: gene Location: 1605-1751 bp Feature: gene Location: 1977-2339 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1986-2304 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1986-23 04 bp Feature: gene Location: 2931-3281 bp Feature: domain Description: Transposase_20 Location: 2994-3252 bp Feature: domain Description: Transposase_20 Location: 2994-3 252 bp Feature: gene Location: 3304-3543 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 3316-3436 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 3 3 16-3 43 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Transposase_20 (pfam02371), DEDD_Tnp_IS110 (pfam01548)