myRT

myRT report for GCA_002418245.1_ASM241824v1

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Seq: DIDR01000122.1 TPA_asm: Candidatus Kuenenia stuttgartiensis isolate UBA5795 UBA5795_contig_1711, whole genome shotgun sequence (6368 bp)
Overview 1 RT 1: 4197-6271 bp Neighborhood of RT #1 [4197, 6336] RVT_N RVT_N RVT-GII RVT-GII GIIM Feature: gene Location: 4197-4418 bp Feature: gene Location: 5125-5256 bp Feature: domain Description: RVT_N Location: 5179-5251 bp Feature: domain Description: RVT_N Location: 51 79-5251 bp Feature: gene Location: 5312-5569 bp Feature: domain Description: RVT_N Location: 5318-5405 bp Feature: domain Description: RVT_N Location: 531 8-5405 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5456-5564 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5456-5564 bp Feature: gene Location: 5740-6336 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5746-6076 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5746-6076 bp Feature: domain Description: GIIM Note: maturase Location: 6133-6271 bp Feature: domain Description: GIIM Note: maturase Location: 61 33-6271 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: DIDR01000064.1 TPA_asm: Candidatus Kuenenia stuttgartiensis isolate UBA5795 UBA5795_contig_626, whole genome shotgun sequence (38494 bp)
Overview 1 RT 1: 3853-10948 bp Neighborhood of RT #1 [3853, 11451] ScpB PRK04914 PRK04914 RVT-UG15 Mod Mod Feature: gene Location: 3853-4380 bp Feature: domain Description: ScpB Location: 3859-4369 bp Feature: domain Description: ScpB Location: 3859-4369 bp Feature: gene Location: 4788-7682 bp Feature: domain Description: PRK04914 Location: 4839-5472 bp Feature: domain Description: PRK04914 Location: 4839-5472 bp Feature: domain Description: PRK04914 Location: 6276-6783 bp Feature: domain Description: PRK04914 Location: 62 76-6783 bp Feature: gene Location: 7782-9248 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 8178-8580 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 8178-8580 bp Feature: gene Location: 9482-9631 bp Feature: gene Location: 9754-11451 bp Feature: domain Description: Mod Location: 9862-10297 bp Feature: domain Description: Mod Location: 9862 -102 97 bp Feature: domain Description: Mod Location: 10657-10948 bp Feature: domain Description: Mod Location: 10657-10948 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ScpB (COG1386), PRK04914 (RNA polymerase-associated protein RapA), RVT-UG15, Mod (COG2189)

Seq: DIDR01000040.1 TPA_asm: Candidatus Kuenenia stuttgartiensis isolate UBA5795 UBA5795_contig_678, whole genome shotgun sequence (38605 bp)
Overview 1 RT 1: 36435-38555 bp Neighborhood of RT #1 [36435, 38602] KilA-N RVT-GII GIIM Feature: gene Location: 36435-36716 bp Feature: domain Description: KilA-N Location: 36453-36627 bp Feature: domain Description: KilA-N Location: 3 6453 -3 6627 bp Feature: gene Location: 37011-38153 bp Feature: gene Location: 38150-38602 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38159-38261 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 8159-3 8261 bp Feature: domain Description: GIIM Note: maturase Location: 38342-38555 bp Feature: domain Description: GIIM Note: maturase Location: 3 83 42-3 8555 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KilA-N (pfam04383), RVT-GII, GIIM (pfam08388)

Seq: DIDR01000144.1 TPA_asm: Candidatus Kuenenia stuttgartiensis isolate UBA5795 UBA5795_contig_837, whole genome shotgun sequence (67102 bp)
Overview 1 RT 1: 1149-4428 bp Neighborhood of RT #1 [1149, 4499] Cas2_I_II_III Cas1_I-II-III RVT-CRISPR Cas_csx3 Cas_Cas02710 Feature: gene Location: 1149-1424 bp Feature: domain Description: Cas2_I_II_III Location: 1158-1389 bp Feature: domain Description: Cas2_I_II_III Location: 1158-1389 bp Feature: gene Location: 1428-2429 bp Feature: domain Description: Cas1_I-II-III Location: 1437-2391 bp Feature: domain Description: Cas1_I-II-III Location: 14 37-2391 bp Feature: gene Location: 2411-3355 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2612-3209 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2612-3209 bp Feature: gene Location: 3358-3519 bp Feature: domain Description: Cas_csx3 Location: 3385-3511 bp Feature: domain Description: Cas_csx3 Location: 3385-3511 bp Feature: gene Location: 3594-4499 bp Feature: domain Description: Cas_Cas02710 Location: 4314-4428 bp Feature: domain Description: Cas_Cas02710 Location: 4 314 -4 4 28 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), Cas1_I-II-III (cl00656), RVT-CRISPR, Cas_csx3 (pfam09620), Cas_Cas02710 (pfam09670)