myRT

myRT report for GCA_002421745.1_ASM242174v1

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Seq: DISC01000006.1 TPA_asm: Patescibacteria group bacterium UBA6220 UBA6220_contig_11289, whole genome shotgun sequence (163923 bp)
Overview 1 RT 1: 51919-56671 bp 2 RT 2: 130204-136937 bp 3 RT 3: 150534-155676 bp Neighborhood of RT #1 [51919, 56671] PrtC DUF3656 RVT-DGRs Avd_like Neighborhood of RT #2 [130204, 136942] PG_binding_1 Resolvase Recombinase Zn_ribbon_recom RVT-Retrons Trypsin_2 GIY-YIG_SLX1_like PRK09210 Neighborhood of RT #3 [150534, 155681] FtsA ftsA YbeY RVT-DGRs Avd_like PulG Fib_succ_major Feature: gene Location: 51919-52176 bp Feature: gene Location: 52295-54127 bp Feature: domain Description: PrtC Location: 52313-53327 bp Feature: domain Description: PrtC Location: 5231 3-53327 bp Feature: domain Description: DUF3656 Location: 53441-53783 bp Feature: domain Description: DUF3656 Location: 53441 -53783 bp Feature: gene Location: 54186-55379 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 54390-55092 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 54390-55092 bp Feature: gene Location: 55810-56151 bp Feature: domain Description: Avd_like Location: 55837-56143 bp Feature: domain Description: Avd_like Location: 55837-561 43 bp Feature: gene Location: 56396-56671 bp Feature: gene Location: 130204-131757 bp Feature: domain Description: PG_binding_1 Location: 130408-130552 bp Feature: domain Description: PG_binding_1 Location: 1 30408-1 30552 bp Feature: gene Location: 131998-133272 bp Feature: domain Description: Resolvase Location: 132019-132454 bp Feature: domain Description: Resolvase Location: 1 3201 9-1 32454 bp Feature: domain Description: Recombinase Location: 132541-132805 bp Feature: domain Description: Recombinase Location: 1 32541 -1 32805 bp Feature: domain Description: Zn_ribbon_recom Location: 132841-133006 bp Feature: domain Description: Zn_ribbon_recom Location: 1 32841 -1 33006 bp Feature: gene Location: 133274-134881 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 133436-134036 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 33436-1 34036 bp Feature: domain Description: Trypsin_2 Location: 134399-134798 bp Feature: domain Description: Trypsin_2 Location: 1 34399-1 34798 bp Feature: gene Location: 135173-135454 bp Feature: domain Description: GIY-YIG_SLX1_like Location: 135185-135386 bp Feature: domain Description: GIY-YIG_SLX1 _like Location: 1 351 85-1 35386 bp Feature: gene Location: 135635-136942 bp Feature: domain Description: PRK09210 Location: 135893-136937 bp Feature: domain Description: PRK0921 0 Location: 1 35893-1 36937 bp Feature: gene Location: 150534-151889 bp Feature: domain Description: FtsA Location: 150537-151503 bp Feature: domain Description: FtsA Location: 1 50537-1 51 503 bp Feature: domain Description: ftsA Location: 151530-151779 bp Feature: domain Description: ftsA Location: 1 51 530-1 51 779 bp Feature: gene Location: 151942-152394 bp Feature: domain Description: YbeY Location: 151966-152380 bp Feature: domain Description: YbeY Location: 1 51 966-1 52380 bp Feature: gene Location: 152573-153763 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 152777-153479 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 52777-1 53479 bp Feature: gene Location: 154151-154492 bp Feature: domain Description: Avd_like Location: 154178-154484 bp Feature: domain Description: Avd_like Location: 1 541 78-1 54484 bp Feature: gene Location: 154686-155681 bp Feature: domain Description: PulG Location: 154689-155082 bp Feature: domain Description: PulG Location: 1 54689-1 55082 bp Feature: domain Description: Fib_succ_major Location: 155100-155676 bp Feature: domain Description: Fib_succ_major Location: 1 551 00-1 55676 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PrtC (COG0826), DUF3656 (pfam12392), RVT-DGRs, Avd_like (cd16376), PG_binding_1 (pfam01471), Resolvase (smart00857), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), RVT-Retrons, Trypsin_2 (pfam13365)
GIY-YIG_SLX1_like (cd10449), PRK09210 (RNA polymerase sigma factor RpoD; Validated), FtsA (smart00842), ftsA (TIGR01174), YbeY (COG0319), PulG (pfam11773), Fib_succ_major (TIGR02145)