myRT

myRT report for GCA_002422905.1_ASM242290v1

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Seq: DITU01000103.1 TPA_asm: Verrucomicrobia bacterium UBA6176 UBA6176_contig_100844, whole genome shotgun sequence (77738 bp)
Overview 1 RT 1: 50066-56659 bp Neighborhood of RT #1 [50066, 56688] PIN_MT3492-like RVT-GII RVT-GII TolC CusA Feature: gene Location: 50066-50356 bp Feature: gene Location: 50671-51117 bp Feature: domain Description: PIN_MT3492-like Location: 50680-51100 bp Feature: domain Description: PIN_MT3492-like Location: 50680-51 1 00 bp Feature: gene Location: 51657-52268 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51663-51792 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 663-51 792 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51792-52083 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 792-52083 bp Feature: gene Location: 52298-53587 bp Feature: domain Description: TolC Location: 52430-53570 bp Feature: domain Description: TolC Location: 52430-53570 bp Feature: gene Location: 53584-56688 bp Feature: domain Description: CusA Location: 53587-56659 bp Feature: domain Description: CusA Location: 53587-56659 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PIN_MT3492-like (cd09874), RVT-GII, TolC (COG1538), CusA (COG3696)

Seq: DITU01000024.1 TPA_asm: Verrucomicrobia bacterium UBA6176 UBA6176_contig_33590, whole genome shotgun sequence (56803 bp)
Overview 1 RT 1: 51272-56674 bp Neighborhood of RT #1 [51272, 56724] COG2865 RVT-GII GIIM PRK00024 Feature: gene Location: 51272-51955 bp Feature: gene Location: 52178-53758 bp Feature: domain Description: COG2865 Location: 52235-53591 bp Feature: domain Description: COG2 865 Location: 52 2 35-53591 bp Feature: gene Location: 54591-55970 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54963-55623 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54963-5562 3 bp Feature: domain Description: GIIM Note: maturase Location: 55704-55902 bp Feature: domain Description: GIIM Note: maturase Location: 55704-55902 bp Feature: gene Location: 56107-56724 bp Feature: domain Description: PRK00024 Location: 56170-56674 bp Feature: domain Description: PRK0002 4 Location: 56170-56674 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG2865 (Predicted transcriptional regulator, contains HTH domain ), RVT-GII, GIIM (pfam08388), PRK00024 (DNA repair protein RadC)

Seq: DITU01000107.1 TPA_asm: Verrucomicrobia bacterium UBA6176 UBA6176_contig_3717, whole genome shotgun sequence (245569 bp)
Overview 1 RT 1: 202468-214538 bp Neighborhood of RT #1 [202468, 214558] YfmG YfmG HRDC RVT-DGRs CarbopepD_reg_2 CARDB CARDB COG3942 FGE-sulfatase Feature: gene Location: 202468-203694 bp Feature: domain Description: YfmG Location: 202846-203152 bp Feature: domain Description: YfmG Location: 202846-203 152 bp Feature: domain Description: YfmG Location: 203206-203674 bp Feature: domain Description: YfmG Location: 203 206-203 674 bp Feature: gene Location: 203880-204341 bp Feature: domain Description: HRDC Location: 204123-204321 bp Feature: domain Description: HRDC Location: 204123 -2043 21 bp Feature: gene Location: 204359-205654 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 204548-205136 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 204548-20513 6 bp Feature: gene Location: 205669-209754 bp Feature: domain Description: CarbopepD_reg_2 Location: 205816-206002 bp Feature: domain Description: CarbopepD_reg_2 Location: 205816-206002 bp Feature: domain Description: CARDB Location: 208744-209032 bp Feature: domain Description: CARDB Location: 208744-20903 2 bp Feature: domain Description: CARDB Location: 209056-209353 bp Feature: domain Description: CARDB Location: 209056-2093 53 bp Feature: gene Location: 211091-214558 bp Feature: domain Description: COG3942 Location: 213284-213623 bp Feature: domain Description: COG3 942 Location: 213 284-213 623 bp Feature: domain Description: FGE-sulfatase Location: 213713-214538 bp Feature: domain Description: FGE-sulfatase Location: 213 713 -21453 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfmG (COG1262), HRDC (smart00341), RVT-DGRs, CarbopepD_reg_2 (pfam13715), CARDB (pfam07705), COG3942 (Surface antigen ), FGE-sulfatase (pfam03781)

Seq: DITU01000034.1 TPA_asm: Verrucomicrobia bacterium UBA6176 UBA6176_contig_59153, whole genome shotgun sequence (42105 bp)
Overview 1 RT 1: 7421-19895 bp Neighborhood of RT #1 [7421, 19999] Patatin PqqL PqqL RVT-GII GIIM Laminin_G_3 Mfd Mfd Mfd Feature: gene Location: 7421-8794 bp Feature: domain Description: Patatin Location: 7574-8288 bp Feature: domain Description: Patatin Location: 7574 -8288 bp Feature: gene Location: 8960-11953 bp Feature: domain Description: PqqL Location: 9401-10661 bp Feature: domain Description: PqqL Location: 94 01-10661 bp Feature: domain Description: PqqL Location: 10685-11915 bp Feature: domain Description: PqqL Location: 10685-11915 bp Feature: gene Location: 12597-13928 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12960-13584 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12960-13584 bp Feature: domain Description: GIIM Note: maturase Location: 13632-13845 bp Feature: domain Description: GIIM Note: maturase Location: 13632-1384 5 bp Feature: gene Location: 14529-15959 bp Feature: domain Description: Laminin_G_3 Location: 14781-15240 bp Feature: domain Description: Laminin_G_3 Location: 14 781-1524 0 bp Feature: gene Location: 16424-19999 bp Feature: domain Description: Mfd Location: 16529-17150 bp Feature: domain Description: Mfd Location: 16529-17150 bp Feature: domain Description: Mfd Location: 17660-19469 bp Feature: domain Description: Mfd Location: 17660-194 69 bp Feature: domain Description: Mfd Location: 19652-19895 bp Feature: domain Description: Mfd Location: 19652-19895 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Patatin (pfam01734), PqqL (COG0612), RVT-GII, GIIM (pfam08388), Laminin_G_3 (pfam13385), Mfd (COG1197)

Seq: DITU01000062.1 TPA_asm: Verrucomicrobia bacterium UBA6176 UBA6176_contig_9071, whole genome shotgun sequence (93231 bp)
Overview 1 RT 1: 19154-25622 bp Neighborhood of RT #1 [19154, 25622] TIGR03986 Cas2_I_II_III RVT-CRISPR Cas_Cas1 Feature: gene Location: 19154-20887 bp Feature: domain Description: TIGR03986 Location: 19172-20723 bp Feature: domain Description: TIGR03986 Location: 19172-20723 bp Feature: gene Location: 21001-21297 bp Feature: domain Description: Cas2_I_II_III Location: 21031-21211 bp Feature: domain Description: Cas2_I_II_III Location: 21031-21211 bp Feature: gene Location: 21321-23978 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 22233-22836 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 22233-22836 bp Feature: domain Description: Cas_Cas1 Location: 22926-23709 bp Feature: domain Description: Cas_Cas1 Location: 22926-23709 bp Feature: gene Location: 24334-24483 bp Feature: gene Location: 25485-25622 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR03986 (CRISPR-associated protein), Cas2_I_II_III (cl11442), RVT-CRISPR, Cas_Cas1 (pfam01867)