myRT

myRT report for GCA_002423035.1_ASM242303v1

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Seq: DIUM01000112.1 TPA_asm: Thiocapsa sp. UBA6158 UBA6158_contig_12542, whole genome shotgun sequence (26901 bp)
Overview 1 RT 1: 245-3187 bp Neighborhood of RT #1 [245, 3255] valS RVT-DGRs MutS_I DUF1778 Acetyltransf_1 Feature: gene Location: 245-1159 bp Feature: domain Description: valS Location: 275-1148 bp Feature: domain Description: valS Location: 275-1 1 48 bp Feature: gene Location: 1231-2307 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1447-1666 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 447-1 666 bp Feature: domain Description: MutS_I Location: 1975-2221 bp Feature: domain Description: MutS_I Location: 1 975-2221 bp Feature: gene Location: 2477-2755 bp Feature: domain Description: DUF1778 Location: 2501-2732 bp Feature: domain Description: DUF1 778 Location: 2501 -2732 bp Feature: gene Location: 2752-3255 bp Feature: domain Description: Acetyltransf_1 Location: 2866-3187 bp Feature: domain Description: Acetyltransf_1 Location: 2866-31 87 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, MutS_I (pfam01624), valS (TIGR00422), DUF1778 (pfam08681), Acetyltransf_1 (pfam00583)

Seq: DIUM01000064.1 TPA_asm: Thiocapsa sp. UBA6158 UBA6158_contig_16796, whole genome shotgun sequence (106921 bp)
Overview 1 RT 1: 82257-86499 bp Neighborhood of RT #1 [82257, 86499] RVT-DGRs Avd_like Feature: gene Location: 82257-82859 bp Feature: gene Location: 82924-83430 bp Feature: gene Location: 83418-84437 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 83628-84216 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 8362 8-842 16 bp Feature: gene Location: 84701-85102 bp Feature: domain Description: Avd_like Location: 84734-85079 bp Feature: domain Description: Avd_like Location: 84734-85079 bp Feature: gene Location: 85147-86499 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376)

Seq: DIUM01000008.1 TPA_asm: Thiocapsa sp. UBA6158 UBA6158_contig_9396, whole genome shotgun sequence (81386 bp)
Overview 1 RT 1: 66717-72209 bp Neighborhood of RT #1 [66717, 72220] RVT-GII GIIM COG5621 LolE LolE Feature: gene Location: 66717-66848 bp Feature: gene Location: 66981-67127 bp Feature: gene Location: 67203-68294 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67212-67827 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67212-67827 bp Feature: domain Description: GIIM Note: maturase Location: 67875-68085 bp Feature: domain Description: GIIM Note: maturase Location: 67875-68085 bp Feature: gene Location: 68574-69647 bp Feature: domain Description: COG5621 Location: 68628-69624 bp Feature: domain Description: COG5621 Location: 68628-69624 bp Feature: gene Location: 69647-72220 bp Feature: domain Description: LolE Location: 69686-70868 bp Feature: domain Description: LolE Location: 69686-70868 bp Feature: domain Description: LolE Location: 71135-72209 bp Feature: domain Description: LolE Location: 7113 5-72209 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG5621 (Predicted secreted hydrolase ), LolE (COG4591)