myRT

myRT report for GCA_002425245.1_ASM242524v1

Download annotations/find similar RTs

Seq: DILW01000052.1 TPA_asm: Betaproteobacteria bacterium UBA5582 UBA5582_contig_17, whole genome shotgun sequence (31030 bp)
Overview 1 RT 1: 10636-16109 bp Neighborhood of RT #1 [10636, 16165] CBS_pair_CA... RVT_N RVT-GII GIIM HNHc HTH_1 PBP2_CbbR_RubisCO_like Feature: gene Location: 10636-11109 bp Feature: gene Location: 11351-11785 bp Feature: domain Description: CBS_pair_CA... Location: 11390-11720 bp Feature: domain Description: CBS_pair_CA... Location: 1 1 390-1 1 720 bp Feature: gene Location: 12924-14594 bp Feature: domain Description: RVT_N Location: 12978-13221 bp Feature: domain Description: RVT_N Location: 1 2978-1 3221 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13266-13905 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3266-1 3905 bp Feature: domain Description: GIIM Note: maturase Location: 13956-14190 bp Feature: domain Description: GIIM Note: maturase Location: 1 3956-1 41 90 bp Feature: domain Description: HNHc Note: nucleases Location: 14397-14547 bp Feature: domain Description: HNHc Note: nucleases Location: 1 4397-1 4547 bp Feature: gene Location: 14882-15226 bp Feature: gene Location: 15239-16165 bp Feature: domain Description: HTH_1 Location: 15266-15440 bp Feature: domain Description: HTH_1 Location: 1 5266-1 5440 bp Feature: domain Description: PBP2_CbbR_RubisCO_like Location: 15530-16109 bp Feature: domain Description: PBP2_CbbR_RubisCO_like Location: 1 5530-1 61 09 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CBS_pair_CA..., RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), HTH_1 (pfam00126), PBP2_CbbR_RubisCO_like (cd08419)

Seq: DILW01000035.1 TPA_asm: Betaproteobacteria bacterium UBA5582 UBA5582_contig_2075, whole genome shotgun sequence (12673 bp)
Overview 1 RT 1: 1306-6112 bp Neighborhood of RT #1 [1306, 6159] OYE_like_FMN AcrR RVT-UG7 YidB Feature: gene Location: 1306-2382 bp Feature: domain Description: OYE_like_FMN Location: 1315-2320 bp Feature: domain Description: OYE_like_FMN Location: 1315-2 32 0 bp Feature: gene Location: 2478-3059 bp Feature: domain Description: AcrR Location: 2499-3033 bp Feature: domain Description: AcrR Location: 2 499-3033 bp Feature: gene Location: 3286-4962 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 3688-4111 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 3688-4111 bp Feature: gene Location: 4952-5674 bp Feature: gene Location: 5749-6159 bp Feature: domain Description: YidB Location: 5761-6112 bp Feature: domain Description: YidB Location: 5761-6112 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OYE_like_FMN (cd02933), AcrR (COG1309), RVT-UG7, YidB (COG3753)