myRT

myRT report for GCA_002425405.1_ASM242540v1

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Seq: DIME01000090.1 TPA_asm: Candidatus Accumulibacter phosphatis isolate UBA5574 UBA5574_contig_114, whole genome shotgun sequence (34107 bp)
Overview 1 RT 1: 1-2364 bp Neighborhood of RT #1 [1, 2381] RVT-DGRs YfmG Gdt1 Feature: gene Location: 1-327 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 22-193 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 22-1 93 bp Feature: gene Location: 482-1528 bp Feature: domain Description: YfmG Location: 701-1496 bp Feature: domain Description: YfmG Location: 701 -1 496 bp Feature: gene Location: 1734-2381 bp Feature: domain Description: Gdt1 Location: 1815-2364 bp Feature: domain Description: Gdt1 Location: 1 81 5-2364 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, YfmG (COG1262), Gdt1 (COG2119)

Seq: DIME01000017.1 TPA_asm: Candidatus Accumulibacter phosphatis isolate UBA5574 UBA5574_contig_176, whole genome shotgun sequence (61308 bp)
Overview 1 RT 1: 25-3488 bp Neighborhood of RT #1 [25, 3526] RVT-Retrons sulP Feature: gene Location: 25-1422 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 535-1177 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 535-1177 bp Feature: gene Location: 1614-1835 bp Feature: gene Location: 1862-3526 bp Feature: domain Description: sulP Location: 1874-3488 bp Feature: domain Description: sulP Location: 1874-3488 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, sulP (TIGR00815)

Seq: DIME01000152.1 TPA_asm: Candidatus Accumulibacter phosphatis isolate UBA5574 UBA5574_contig_22, whole genome shotgun sequence (44055 bp)
Overview 1 RT 1: 202-1515 bp Neighborhood of RT #1 [202, 1577] RVT-GII COG2929 BrnA_antitoxin Feature: gene Location: 202-924 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 490-919 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 490-919 bp Feature: gene Location: 1049-1318 bp Feature: domain Description: COG2929 Location: 1052-1307 bp Feature: domain Description: COG2929 Location: 1052-13 07 bp Feature: gene Location: 1287-1577 bp Feature: domain Description: BrnA_antitoxin Location: 1338-1515 bp Feature: domain Description: BrnA_antitoxin Location: 13 3 8-1515 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, COG2929 (Uncharacterized conserved protein, DUF497 family ), BrnA_antitoxin (pfam14384)

Seq: DIME01000183.1 TPA_asm: Candidatus Accumulibacter phosphatis isolate UBA5574 UBA5574_contig_34, whole genome shotgun sequence (76593 bp)
Overview 1 RT 1: 15527-18405 bp Neighborhood of RT #1 [15527, 18405] YfmG Avd_like RVT-DGRs YfmG Feature: gene Location: 15527-16564 bp Feature: domain Description: YfmG Location: 15764-16559 bp Feature: domain Description: YfmG Location: 15764 -16559 bp Feature: gene Location: 16605-17000 bp Feature: domain Description: Avd_like Location: 16680-16980 bp Feature: domain Description: Avd_like Location: 16680-16980 bp Feature: gene Location: 17059-18057 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 17194-17833 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 17194 -17833 bp Feature: gene Location: 18088-18249 bp Feature: domain Description: YfmG Location: 18094-18202 bp Feature: domain Description: YfmG Location: 18094 -18202 bp Feature: gene Location: 18268-18405 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfmG (COG1262), Avd_like (cd16376), RVT-DGRs

Seq: DIME01000048.1 TPA_asm: Candidatus Accumulibacter phosphatis isolate UBA5574 UBA5574_contig_344, whole genome shotgun sequence (9707 bp)
Overview 1 RT 1: 2818-8476 bp Neighborhood of RT #1 [2818, 8476] HTH_32 rve ExeA RVT-GII Feature: gene Location: 2818-4140 bp Feature: domain Description: HTH_32 Location: 2983-3211 bp Feature: domain Description: HTH_32 Location: 2983-3211 bp Feature: domain Description: rve Location: 3289-3634 bp Feature: domain Description: rve Location: 3289-3634 bp Feature: gene Location: 4143-4937 bp Feature: domain Description: ExeA Location: 4152-4887 bp Feature: domain Description: ExeA Location: 415 2-4887 bp Feature: gene Location: 5345-6661 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5603-6293 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 603-6293 bp Feature: gene Location: 6859-7002 bp Feature: gene Location: 7145-8476 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_32 (pfam13565), rve (pfam00665), ExeA (COG3267), RVT-GII

Seq: DIME01000184.1 TPA_asm: Candidatus Accumulibacter phosphatis isolate UBA5574 UBA5574_contig_51, whole genome shotgun sequence (34997 bp)
Overview 1 RT 1: 1961-7420 bp Neighborhood of RT #1 [1961, 7566] YfmG YfmG RVT-DGRs Hrd YfmG Feature: gene Location: 1961-2803 bp Feature: domain Description: YfmG Location: 2099-2717 bp Feature: domain Description: YfmG Location: 2099-2717 bp Feature: gene Location: 2844-3104 bp Feature: domain Description: YfmG Location: 2850-2952 bp Feature: domain Description: YfmG Location: 2850-2952 bp Feature: gene Location: 3234-4253 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3444-4029 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3444-4029 bp Feature: gene Location: 4250-4741 bp Feature: domain Description: Hrd Location: 4520-4721 bp Feature: domain Description: Hrd Location: 4520-4721 bp Feature: gene Location: 4738-7566 bp Feature: domain Description: YfmG Location: 6727-7420 bp Feature: domain Description: YfmG Location: 6 727-7420 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfmG (COG1262), RVT-DGRs, Hrd (LOAD_Hrd)

Seq: DIME01000188.1 TPA_asm: Candidatus Accumulibacter phosphatis isolate UBA5574 UBA5574_contig_58, whole genome shotgun sequence (100621 bp)
Overview 1 RT 1: 92925-98945 bp Neighborhood of RT #1 [92925, 98945] KOG0288 WD40 WD40 WD40 WD40 YfmG Avd_like RVT-DGRs YfmG Feature: gene Location: 92925-96992 bp Feature: domain Description: KOG0288 Location: 95238-95424 bp Feature: domain Description: KOG0288 Location: 95238-95424 bp Feature: domain Description: WD40 Location: 95466-95547 bp Feature: domain Description: WD40 Location: 95466-95547 bp Feature: domain Description: WD40 Location: 95748-95841 bp Feature: domain Description: WD40 Location: 957 48-95841 bp Feature: domain Description: WD40 Location: 96015-96114 bp Feature: domain Description: WD40 Location: 96015-96114 bp Feature: domain Description: WD40 Location: 96138-96243 bp Feature: domain Description: WD40 Location: 96138-96243 bp Feature: domain Description: YfmG Location: 96285-96987 bp Feature: domain Description: YfmG Location: 96285-96987 bp Feature: gene Location: 97033-97428 bp Feature: domain Description: Avd_like Location: 97108-97408 bp Feature: domain Description: Avd_like Location: 97 108-97 408 bp Feature: gene Location: 97412-98485 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 97622-98261 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 97 622-98261 bp Feature: gene Location: 98516-98677 bp Feature: domain Description: YfmG Location: 98522-98630 bp Feature: domain Description: YfmG Location: 98522-98630 bp Feature: gene Location: 98694-98945 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG0288 (KOG0288, WD40 repeat protein TipD ), WD40 (smart00320), YfmG (COG1262), Avd_like (cd16376), RVT-DGRs

Seq: DIME01000158.1 TPA_asm: Candidatus Accumulibacter phosphatis isolate UBA5574 UBA5574_contig_804, whole genome shotgun sequence (12733 bp)
Overview 1 RT 1: 89-1819 bp Neighborhood of RT #1 [89, 1819] RVT-UG4 Feature: gene Location: 89-709 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 98-413 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 98 -413 bp Feature: gene Location: 767-1120 bp Feature: gene Location: 1541-1819 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4