myRT

myRT report for GCA_002426625.1_ASM242662v1

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Seq: DIRF01000142.1 TPA_asm: Syntrophomonas sp. UBA5443 UBA5443_contig_3253, whole genome shotgun sequence (8576 bp)
Overview 1 RT 1: 3935-8542 bp Neighborhood of RT #1 [3935, 8574] YwgA YdhJ RVT-UG7 YdcF-like Feature: gene Location: 3935-4456 bp Feature: domain Description: YwgA Location: 3971-4232 bp Feature: domain Description: YwgA Location: 3971 -4232 bp Feature: gene Location: 4476-5924 bp Feature: domain Description: YdhJ Location: 4482-5754 bp Feature: domain Description: YdhJ Location: 4482-5754 bp Feature: gene Location: 6237-7835 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 6672-7077 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 6672-7077 bp Feature: gene Location: 7897-8574 bp Feature: domain Description: YdcF-like Location: 8062-8542 bp Feature: domain Description: YdcF-like Location: 8062-8542 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YwgA (COG3465), YdhJ (COG1078), RVT-UG7, YdcF-like (cl00630)

Seq: DIRF01000014.1 TPA_asm: Syntrophomonas sp. UBA5443 UBA5443_contig_4432, whole genome shotgun sequence (65170 bp)
Overview 1 RT 1: 61611-64922 bp Neighborhood of RT #1 [61611, 64922] BirA2 biotinyl_domain RVT-GII GIIM YkfC Feature: gene Location: 61611-62537 bp Feature: domain Description: BirA2 Location: 61806-62511 bp Feature: domain Description: BirA2 Location: 61806-62 511 bp Feature: gene Location: 62688-62900 bp Feature: domain Description: biotinyl_domain Location: 62703-62895 bp Feature: domain Description: biotinyl_domain Location: 62 703-62 895 bp Feature: gene Location: 63093-64136 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63096-63690 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63096-63690 bp Feature: domain Description: GIIM Note: maturase Location: 63747-63969 bp Feature: domain Description: GIIM Note: maturase Location: 63747-63969 bp Feature: gene Location: 64256-64510 bp Feature: domain Description: YkfC Location: 64385-64508 bp Feature: domain Description: YkfC Location: 64385-64508 bp Feature: gene Location: 64728-64922 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BirA2 (COG0340), biotinyl_domain (cd06850), RVT-GII, GIIM (pfam08388), YkfC (COG3344)