myRT

myRT report for GCA_002427895.1_ASM242789v1

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Seq: DIZK01000081.1 TPA_asm: Ramlibacter tataouinensis isolate UBA6030 UBA6030_contig_418, whole genome shotgun sequence (158933 bp)
Overview 1 RT 1: 70056-75616 bp 2 RT 2: 140001-145104 bp Neighborhood of RT #1 [70056, 75621] SPFH_eoslipins_u3 integrase_gron RVT-GII GIIM Unstab_antitox toxin_Txe_YoeB Neighborhood of RT #2 [140001, 145136] COG5340 COG2442 RVT-GII GIIM ACAD Feature: gene Location: 70056-70925 bp Feature: domain Description: SPFH_eoslipins_u3 Location: 70299-70827 bp Feature: domain Description: SPFH_eoslipins_u3 Location: 70299-70827 bp Feature: gene Location: 71024-71512 bp Feature: domain Description: integrase_gron Location: 71027-71495 bp Feature: domain Description: integrase_gron Location: 71 027-71 495 bp Feature: gene Location: 72969-74261 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73224-73842 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73224-73842 bp Feature: domain Description: GIIM Note: maturase Location: 73890-74103 bp Feature: domain Description: GIIM Note: maturase Location: 73890-741 03 bp Feature: gene Location: 74682-74969 bp Feature: domain Description: Unstab_antitox Location: 74790-74946 bp Feature: domain Description: Unstab_antitox Location: 74790-74946 bp Feature: gene Location: 75355-75621 bp Feature: domain Description: toxin_Txe_YoeB Location: 75379-75616 bp Feature: domain Description: toxin_Txe_YoeB Location: 75379-7561 6 bp Feature: gene Location: 140001-140609 bp Feature: domain Description: COG5340 Location: 140043-140508 bp Feature: domain Description: COG5340 Location: 1 40043-1 40508 bp Feature: gene Location: 140517-141449 bp Feature: domain Description: COG2442 Location: 141270-141441 bp Feature: domain Description: COG2442 Location: 1 41 270-1 41 441 bp Feature: gene Location: 142166-143485 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 142451-143066 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 42451 -1 43066 bp Feature: domain Description: GIIM Note: maturase Location: 143123-143327 bp Feature: domain Description: GIIM Note: maturase Location: 1 431 23-1 43327 bp Feature: gene Location: 143564-143887 bp Feature: gene Location: 144015-145136 bp Feature: domain Description: ACAD Location: 144036-145104 bp Feature: domain Description: ACAD Location: 1 44036-1 451 04 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SPFH_eoslipins_u3 (cd13775), integrase_gron (TIGR02249), RVT-GII, GIIM (pfam08388), Unstab_antitox (pfam09720), toxin_Txe_YoeB (TIGR02116), COG5340 (Transcriptional regulator, predicted component of viral defense system ), COG2442 (Uncharacterized conserved protein, DUF433 family ), ACAD (cl09933)