myRT

myRT report for GCA_002428265.1_ASM242826v1

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Seq: DIUR01000019.1 TPA_asm: Bacteriovoracaceae bacterium UBA6153 UBA6153_contig_117908, whole genome shotgun sequence (3051 bp)
Overview 1 RT 1: 211-2443 bp Neighborhood of RT #1 [211, 2730] RVT-UG13 GIY-YIG Feature: gene Location: 211-1959 bp Feature: RT Description: RVT-UG13 Note: UG13 RT Location: 562-1030 bp Feature: RT Description: RVT-UG1 3 Note: UG1 3 RT Location: 562-1 030 bp Feature: gene Location: 1975-2151 bp Feature: gene Location: 2179-2730 bp Feature: domain Description: GIY-YIG Location: 2257-2443 bp Feature: domain Description: GIY-YIG Location: 2257-2443 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG13, GIY-YIG (pfam01541)

Seq: DIUR01000005.1 TPA_asm: Bacteriovoracaceae bacterium UBA6153 UBA6153_contig_14233, whole genome shotgun sequence (38757 bp)
Overview 1 RT 1: 24586-28197 bp 2 RT 2: 34807-38355 bp Neighborhood of RT #1 [24586, 28205] INT_ICEBs1_C_like HTH_17 RVT-GII GIIM SSB_OBF Neighborhood of RT #2 [34807, 38756] TraC-F-type RVT-GII GIIM TraC-F-type Feature: gene Location: 24586-25734 bp Feature: domain Description: INT_ICEBs1_C_like Location: 25144-25627 bp Feature: domain Description: INT_ICEBs1_C_like Location: 2 5144-2 562 7 bp Feature: gene Location: 25744-26010 bp Feature: domain Description: HTH_17 Location: 25852-25996 bp Feature: domain Description: HTH_17 Location: 2 5852 -2 5996 bp Feature: gene Location: 26225-27451 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26429-27089 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 642 9-2 7089 bp Feature: domain Description: GIIM Note: maturase Location: 27170-27374 bp Feature: domain Description: GIIM Note: maturase Location: 2 7170-2 7374 bp Feature: gene Location: 27444-27806 bp Feature: gene Location: 27981-28205 bp Feature: domain Description: SSB_OBF Location: 28005-28197 bp Feature: domain Description: SSB_OBF Location: 2 8005-2 8197 bp Feature: gene Location: 34807-35511 bp Feature: gene Location: 35504-36055 bp Feature: domain Description: TraC-F-type Location: 35624-35963 bp Feature: domain Description: TraC-F-type Location: 3562 4-35963 bp Feature: gene Location: 36048-37358 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36318-36987 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36318-36987 bp Feature: domain Description: GIIM Note: maturase Location: 37068-37269 bp Feature: domain Description: GIIM Note: maturase Location: 37068-372 69 bp Feature: gene Location: 37800-38756 bp Feature: domain Description: TraC-F-type Location: 38019-38355 bp Feature: domain Description: TraC-F-type Location: 38019-38355 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_ICEBs1_C_like (cd01189), HTH_17 (pfam12728), RVT-GII, GIIM (pfam08388), SSB_OBF (cd04496), TraC-F-type (TIGR02746)

Seq: DIUR01000011.1 TPA_asm: Bacteriovoracaceae bacterium UBA6153 UBA6153_contig_1566, whole genome shotgun sequence (46486 bp)
Overview 1 RT 1: 41328-44069 bp Neighborhood of RT #1 [41328, 44827] HTH_17 Avd_like RVT-DGRs LysM Feature: gene Location: 41328-42152 bp Feature: domain Description: HTH_17 Location: 41355-41487 bp Feature: domain Description: HTH_17 Location: 413 55-41487 bp Feature: gene Location: 42329-42517 bp Feature: domain Description: Avd_like Location: 42335-42494 bp Feature: domain Description: Avd_like Location: 423 3 5-42494 bp Feature: gene Location: 42514-43503 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 42724-43354 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 42724-43 3 54 bp Feature: gene Location: 43500-43877 bp Feature: gene Location: 43874-44827 bp Feature: domain Description: LysM Location: 43949-44069 bp Feature: domain Description: LysM Location: 43 949-44069 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_17 (pfam12728), Avd_like (cd16376), RVT-DGRs, LysM (smart00257)

Seq: DIUR01000027.1 TPA_asm: Bacteriovoracaceae bacterium UBA6153 UBA6153_contig_1568, whole genome shotgun sequence (423805 bp)
Overview 1 RT 1: 414378-418752 bp Neighborhood of RT #1 [414378, 418802] HTH_17 Avd_like RVT-DGRs LysM COG3943 Feature: gene Location: 414378-415067 bp Feature: domain Description: HTH_17 Location: 414420-414558 bp Feature: domain Description: HTH_17 Location: 4 14 4 20-4 14 558 bp Feature: gene Location: 415036-415422 bp Feature: domain Description: Avd_like Location: 415075-415399 bp Feature: domain Description: Avd_like Location: 4 15075-4 15399 bp Feature: gene Location: 415419-416369 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 415617-416223 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4 15617-4 16223 bp Feature: gene Location: 416366-417676 bp Feature: domain Description: LysM Location: 416792-416948 bp Feature: domain Description: LysM Location: 4 16792-4 1694 8 bp Feature: gene Location: 417708-418802 bp Feature: domain Description: COG3943 Location: 417762-418752 bp Feature: domain Description: COG394 3 Location: 4 17762-4 18752 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_17 (pfam12728), Avd_like (cd16376), RVT-DGRs, LysM (smart00257), COG3943 (Uncharacterized conserved protein )

Seq: DIUR01000004.1 TPA_asm: Bacteriovoracaceae bacterium UBA6153 UBA6153_contig_63751, whole genome shotgun sequence (10941 bp)
Overview 1 RT 1: 4621-9765 bp Neighborhood of RT #1 [4621, 10940] STE14 LysM RVT-DGRs HTH_17 FN3 FN3 Feature: gene Location: 4621-5130 bp Feature: domain Description: STE14 Location: 4690-5104 bp Feature: domain Description: STE14 Location: 4690-5 104 bp Feature: gene Location: 5250-6320 bp Feature: domain Description: LysM Location: 5337-5496 bp Feature: domain Description: LysM Location: 5 337-5 496 bp Feature: gene Location: 6615-7652 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6846-7488 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6846-7488 bp Feature: gene Location: 7940-8572 bp Feature: domain Description: HTH_17 Location: 7967-8099 bp Feature: domain Description: HTH_17 Location: 7967-8099 bp Feature: gene Location: 8832-10940 bp Feature: domain Description: FN3 Location: 8976-9171 bp Feature: domain Description: FN3 Location: 8976-9171 bp Feature: domain Description: FN3 Location: 9561-9765 bp Feature: domain Description: FN3 Location: 95 61-9765 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT STE14 (COG2020), LysM (smart00257), RVT-DGRs, HTH_17 (pfam12728), FN3 (smart00060)