myRT

myRT report for GCA_002428295.1_ASM242829v1

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Seq: DIVS01000045.1 TPA_asm: Caldiserica bacterium UBA6126 UBA6126_contig_14460, whole genome shotgun sequence (38241 bp)
Overview 1 RT 1: 4660-7177 bp Neighborhood of RT #1 [4660, 7177] INT_RitB_C_like Phage_int_SAM_1 INT_RitC_C_like RVT-GII Feature: gene Location: 4660-4899 bp Feature: domain Description: INT_RitB_C_like Location: 4672-4837 bp Feature: domain Description: INT_RitB_C_like Location: 4672-4837 bp Feature: gene Location: 4886-5899 bp Feature: domain Description: Phage_int_SAM_1 Location: 4934-5174 bp Feature: domain Description: Phage_int_SAM_1 Location: 4934-51 74 bp Feature: domain Description: INT_RitC_C_like Location: 5264-5816 bp Feature: domain Description: INT_RitC_C_like Location: 5264-581 6 bp Feature: gene Location: 5982-6605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6186-6576 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61 86-6576 bp Feature: gene Location: 6649-6855 bp Feature: gene Location: 7034-7177 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_RitB_C_like (cd00797), Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182), RVT-GII

Seq: DIVS01000026.1 TPA_asm: Caldiserica bacterium UBA6126 UBA6126_contig_26024, whole genome shotgun sequence (8122 bp)
Overview 1 RT 1: 2994-7750 bp Neighborhood of RT #1 [2994, 7824] HTH_28 HTH_28 PHA02517 RVT-GII GIIM Feature: gene Location: 2994-4415 bp Feature: domain Description: HTH_28 Location: 3048-3162 bp Feature: domain Description: HTH_2 8 Location: 3048-3162 bp Feature: domain Description: HTH_28 Location: 3273-3375 bp Feature: domain Description: HTH_2 8 Location: 32 73-3375 bp Feature: domain Description: PHA02517 Location: 3627-4392 bp Feature: domain Description: PHA02 517 Location: 362 7-4392 bp Feature: gene Location: 4581-5984 bp Feature: gene Location: 6523-7824 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6778-7471 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6778-7471 bp Feature: domain Description: GIIM Note: maturase Location: 7531-7750 bp Feature: domain Description: GIIM Note: maturase Location: 7531-7750 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_28 (pfam13518), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: DIVS01000110.1 TPA_asm: Caldiserica bacterium UBA6126 UBA6126_contig_40144, whole genome shotgun sequence (9014 bp)
Overview 1 RT 1: 536-5489 bp Neighborhood of RT #1 [536, 5489] RVT-GII GIIM TolB TolB TolB Feature: gene Location: 536-1876 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 872-1523 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 872-1523 bp Feature: domain Description: GIIM Note: maturase Location: 1595-1814 bp Feature: domain Description: GIIM Note: maturase Location: 1595-1814 bp Feature: gene Location: 2114-4864 bp Feature: domain Description: TolB Location: 2408-2705 bp Feature: domain Description: TolB Location: 2408-2705 bp Feature: domain Description: TolB Location: 2933-3086 bp Feature: domain Description: TolB Location: 293 3 -3 086 bp Feature: domain Description: TolB Location: 3650-4214 bp Feature: domain Description: TolB Location: 3 650-4214 bp Feature: gene Location: 4938-5489 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TolB (COG0823), RVT-GII, GIIM (pfam08388)