myRT

myRT report for GCA_002429095.1_ASM242909v1

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Seq: DIYQ01000062.1 TPA_asm: Cyanobacteria bacterium UBA6050 UBA6050_contig_18, whole genome shotgun sequence (139832 bp)
Overview 1 RT 1: 135391-138431 bp Neighborhood of RT #1 [135391, 138436] dcd RVT_N RVT-GII GIIM HNH dcd Feature: gene Location: 135391-135606 bp Feature: domain Description: dcd Location: 135394-135565 bp Feature: domain Description: dcd Location: 1 35394-1 35565 bp Feature: gene Location: 135670-135816 bp Feature: gene Location: 136212-137987 bp Feature: RT Description: RVT_N Location: 136242-136485 bp Feature: RT Description: RVT_N Location: 1 36242-1 36485 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 136530-137199 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 36530-1 371 99 bp Feature: domain Description: GIIM Note: maturase Location: 137298-137532 bp Feature: domain Description: GIIM Note: maturase Location: 1 37298-1 37532 bp Feature: domain Description: HNH Note: nucleases Location: 137745-137880 bp Feature: domain Description: HNH Note: nucleases Location: 1 37745-1 37880 bp Feature: gene Location: 137993-138130 bp Feature: gene Location: 138194-138436 bp Feature: domain Description: dcd Location: 138200-138431 bp Feature: domain Description: dcd Location: 1 38200-1 38431 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dcd (PRK00416), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844)

Seq: DIYQ01000081.1 TPA_asm: Cyanobacteria bacterium UBA6050 UBA6050_contig_283, whole genome shotgun sequence (16943 bp)
Overview 1 RT 1: 1-5532 bp Neighborhood of RT #1 [1, 5532] RVT-GII GIIM McrA Tn7_Tnp_TnsA_N Tn7_Tnp_TnsA_C rve Feature: gene Location: 1-822 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-85 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-85 bp Feature: domain Description: GIIM Note: maturase Location: 184-418 bp Feature: domain Description: GIIM Note: maturase Location: 184-418 bp Feature: domain Description: McrA Location: 502-781 bp Feature: domain Description: McrA Location: 502 -781 bp Feature: gene Location: 1731-4427 bp Feature: domain Description: Tn7_Tnp_TnsA_N Location: 1959-2223 bp Feature: domain Description: Tn7_Tnp_TnsA_N Location: 1959-2 2 2 3 bp Feature: domain Description: Tn7_Tnp_TnsA_C Location: 2235-2439 bp Feature: domain Description: Tn7_Tnp_TnsA_C Location: 2 2 35-2 439 bp Feature: domain Description: rve Location: 3255-3612 bp Feature: domain Description: rve Location: 32 55-3612 bp Feature: gene Location: 4405-5532 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tn7_Tnp_TnsA_N (pfam08722), Tn7_Tnp_TnsA_C (pfam08721), rve (pfam00665), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: DIYQ01000107.1 TPA_asm: Cyanobacteria bacterium UBA6050 UBA6050_contig_39, whole genome shotgun sequence (85491 bp)
Overview 1 RT 1: 60636-65794 bp Neighborhood of RT #1 [60636, 65826] Nuc_deoxyrib_tr RVT-Retrons RhaT REC Feature: gene Location: 60636-61229 bp Feature: gene Location: 61251-61715 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 61275-61560 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 61275-61560 bp Feature: gene Location: 62013-63422 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 62562-63171 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 62562-63 171 bp Feature: gene Location: 63659-64576 bp Feature: domain Description: RhaT Location: 63671-64553 bp Feature: domain Description: RhaT Location: 63 671-64553 bp Feature: gene Location: 64573-65826 bp Feature: domain Description: REC Location: 65458-65794 bp Feature: domain Description: REC Location: 65458-65794 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Nuc_deoxyrib_tr (pfam05014), RVT-Retrons, RhaT (TIGR00776), REC (smart00448)

Seq: DIYQ01000073.1 TPA_asm: Cyanobacteria bacterium UBA6050 UBA6050_contig_405, whole genome shotgun sequence (41126 bp)
Overview 1 RT 1: 38757-41024 bp Neighborhood of RT #1 [38757, 41024] HNHc RVT_N RVT-GII Feature: gene Location: 38757-39065 bp Feature: gene Location: 39172-39579 bp Feature: domain Description: HNHc Note: nucleases Location: 39379-39538 bp Feature: domain Description: HNHc Note: nucleases Location: 39379-39538 bp Feature: gene Location: 39612-40517 bp Feature: RT Description: RVT_N Location: 39654-39900 bp Feature: RT Description: RVT_N Location: 39654 -39900 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39942-40491 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3994 2-4 04 91 bp Feature: gene Location: 40869-41024 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HNHc (smart00507), RVT_N (pfam13655), RVT-GII

Seq: DIYQ01000090.1 TPA_asm: Cyanobacteria bacterium UBA6050 UBA6050_contig_538, whole genome shotgun sequence (4728 bp)
Overview 1 RT 1: 3-4726 bp Neighborhood of RT #1 [3, 4726] DDE_Tnp_Tn3 RVT_N RVT-GII GIIM McrA Phage_integrase Feature: gene Location: 3-698 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 183-687 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 183-687 bp Feature: gene Location: 1382-3160 bp Feature: RT Description: RVT_N Location: 1415-1661 bp Feature: RT Description: RVT_N Location: 1415 -1661 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1703-2363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1703-2363 bp Feature: domain Description: GIIM Note: maturase Location: 2459-2693 bp Feature: domain Description: GIIM Note: maturase Location: 245 9-2693 bp Feature: domain Description: McrA Location: 2780-3056 bp Feature: domain Description: McrA Location: 2780-305 6 bp Feature: gene Location: 3357-3983 bp Feature: domain Description: Phage_integrase Location: 3387-3891 bp Feature: domain Description: Phage_integrase Location: 3387-3891 bp Feature: gene Location: 4259-4726 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), Phage_integrase (pfam00589), DDE_Tnp_Tn3 (pfam01526)