myRT

myRT report for GCA_002429115.1_ASM242911v1

Download annotations/find similar RTs

Seq: DIYS01000026.1 TPA_asm: Saccharicrinis sp. UBA6048 UBA6048_contig_14408, whole genome shotgun sequence (5692 bp)
Overview 1 RT 1: 1019-5690 bp Neighborhood of RT #1 [1019, 5690] RVT-GII SusD DUF4369 NHL NHL_like_5 Feature: gene Location: 1019-1213 bp Feature: gene Location: 1255-1437 bp Feature: gene Location: 1441-2829 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1639-1771 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 639-1 771 bp Feature: domain Description: SusD Location: 1774-2689 bp Feature: domain Description: SusD Location: 1 774-2689 bp Feature: gene Location: 3027-4658 bp Feature: domain Description: DUF4369 Location: 3120-3387 bp Feature: domain Description: DUF4369 Location: 31 20-3387 bp Feature: domain Description: NHL Location: 3834-4245 bp Feature: domain Description: NHL Location: 3834-4245 bp Feature: domain Description: NHL_like_5 Location: 4311-4617 bp Feature: domain Description: NHL_like_5 Location: 431 1 -461 7 bp Feature: gene Location: 5538-5690 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, SusD (NF033071), DUF4369 (pfam14289), NHL (pfam01436), NHL_like_5 (cd14963)

Seq: DIYS01000149.1 TPA_asm: Saccharicrinis sp. UBA6048 UBA6048_contig_22366, whole genome shotgun sequence (2722 bp)
Overview 1 RT 1: 317-2039 bp Neighborhood of RT #1 [317, 2719] Exo_endo_phos_2 RVT-UNC Feature: gene Location: 317-2719 bp Feature: domain Description: Exo_endo_phos_2 Location: 341-521 bp Feature: domain Description: Exo_endo_phos_2 Location: 341-52 1 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1409-2039 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1409-2 039 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Exo_endo_phos_2 (pfam14529), RVT-UG11/RVT-GII/RVT-CRISPR(RVT-UNC)

Seq: DIYS01000092.1 TPA_asm: Saccharicrinis sp. UBA6048 UBA6048_contig_22646, whole genome shotgun sequence (3089 bp)
Overview 1 RT 1: 3-3086 bp Neighborhood of RT #1 [3, 3086] L1-EN RVT-UNC Feature: gene Location: 3-2402 bp Feature: domain Description: L1-EN Location: 27-717 bp Feature: domain Description: L1-EN Location: 27-717 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1617-2292 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1617-2292 bp Feature: gene Location: 2396-2548 bp Feature: gene Location: 2598-3086 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT L1-EN (cd09076), RVT-UG11/RVT-GII/RVT-CRISPR(RVT-UNC)

Seq: DIYS01000009.1 TPA_asm: Saccharicrinis sp. UBA6048 UBA6048_contig_3250, whole genome shotgun sequence (2622 bp)
Overview 1 RT 1: 1-2359 bp Neighborhood of RT #1 [1, 2619] RVT-UNC L1-EN Feature: gene Location: 1-381 bp Feature: gene Location: 450-1358 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 501-915 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 501-915 bp Feature: gene Location: 1478-2083 bp Feature: gene Location: 2128-2619 bp Feature: domain Description: L1-EN Location: 2167-2359 bp Feature: domain Description: L1-EN Location: 2167-2359 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG28/RVT-CRISPR/RVT-GII(RVT-UNC), L1-EN (cd09076)

Seq: DIYS01000021.1 TPA_asm: Saccharicrinis sp. UBA6048 UBA6048_contig_5320, whole genome shotgun sequence (2742 bp)
Overview 1 RT 1: 3-1845 bp Neighborhood of RT #1 [3, 2741] L1-EN RVT-UNC Feature: gene Location: 3-2741 bp Feature: domain Description: L1-EN Location: 45-291 bp Feature: domain Description: L1-EN Location: 45 -291 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1206-1845 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1206-1845 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT L1-EN (cd09076), RVT-UG11/RVT-GII/RVT-CRISPR(RVT-UNC)

Seq: DIYS01000226.1 TPA_asm: Saccharicrinis sp. UBA6048 UBA6048_contig_692, whole genome shotgun sequence (2530 bp)
Overview 1 RT 1: 3-1518 bp Neighborhood of RT #1 [3, 2273] RVT-UNC Feature: gene Location: 3-2273 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 963-1518 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 96 3-1518 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG2/RVT-CRISPR/RVT-GII(RVT-UNC)