myRT

myRT report for GCA_002429135.1_ASM242913v1

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Seq: DIYT01000047.1 TPA_asm: Cyanobacteria bacterium UBA6047 UBA6047_contig_125, whole genome shotgun sequence (107310 bp)
Overview 1 RT 1: 25142-30452 bp Neighborhood of RT #1 [25142, 30472] RVT-DGRs Avd_like TPR TPR_1 YfmG Feature: gene Location: 25142-25375 bp Feature: gene Location: 25385-25603 bp Feature: gene Location: 26201-27259 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 26411-27053 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2641 1 -27053 bp Feature: gene Location: 27256-27606 bp Feature: domain Description: Avd_like Location: 27274-27580 bp Feature: domain Description: Avd_like Location: 27274-27580 bp Feature: gene Location: 27698-30472 bp Feature: domain Description: TPR Location: 29285-29492 bp Feature: domain Description: TPR Location: 29285-29492 bp Feature: domain Description: TPR_1 Location: 29531-29597 bp Feature: domain Description: TPR_1 Location: 29531 -29597 bp Feature: domain Description: YfmG Location: 29675-30452 bp Feature: domain Description: YfmG Location: 29675-30452 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), TPR (smart00028), TPR_1 (pfam00515), YfmG (COG1262)

Seq: DIYT01000104.1 TPA_asm: Cyanobacteria bacterium UBA6047 UBA6047_contig_196, whole genome shotgun sequence (18214 bp)
Overview 1 RT 1: 16221-18180 bp Neighborhood of RT #1 [16221, 18212] Pentapeptide Pentapeptide RVT-GII GIIM McrA Feature: gene Location: 16221-16670 bp Feature: domain Description: Pentapeptide Location: 16344-16422 bp Feature: domain Description: Pentapeptide Location: 16344-1642 2 bp Feature: domain Description: Pentapeptide Location: 16554-16638 bp Feature: domain Description: Pentapeptide Location: 16554-16638 bp Feature: gene Location: 16892-17107 bp Feature: gene Location: 17337-18212 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17340-17502 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17340-17502 bp Feature: domain Description: GIIM Note: maturase Location: 17595-17826 bp Feature: domain Description: GIIM Note: maturase Location: 17595-1782 6 bp Feature: domain Description: McrA Location: 17907-18180 bp Feature: domain Description: McrA Location: 17907-18180 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Pentapeptide (pfam00805), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: DIYT01000023.1 TPA_asm: Cyanobacteria bacterium UBA6047 UBA6047_contig_214, whole genome shotgun sequence (21735 bp)
Overview 1 RT 1: 72-5757 bp Neighborhood of RT #1 [72, 5834] RVT_N RVT-GII GIIM HNHc COG5635 HEAT TxlA Feature: gene Location: 72-398 bp Feature: gene Location: 665-2482 bp Feature: domain Description: RVT_N Location: 728-974 bp Feature: domain Description: RVT_N Location: 728-974 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1016-1736 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1016-173 6 bp Feature: domain Description: GIIM Note: maturase Location: 1838-2069 bp Feature: domain Description: GIIM Note: maturase Location: 183 8-2069 bp Feature: domain Description: HNHc Note: nucleases Location: 2270-2420 bp Feature: domain Description: HNHc Note: nucleases Location: 2270-2420 bp Feature: gene Location: 2540-5005 bp Feature: domain Description: COG5635 Location: 3020-4448 bp Feature: domain Description: COG563 5 Location: 3 020-4448 bp Feature: domain Description: HEAT Location: 4703-4952 bp Feature: domain Description: HEAT Location: 4703 -4952 bp Feature: gene Location: 5196-5834 bp Feature: domain Description: TxlA Location: 5454-5757 bp Feature: domain Description: TxlA Location: 5454-5757 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), COG5635 (Predicted NTPase, NACHT family domain ), HEAT (sd00044), TxlA (cd02950)

Seq: DIYT01000093.1 TPA_asm: Cyanobacteria bacterium UBA6047 UBA6047_contig_51, whole genome shotgun sequence (160679 bp)
Overview 1 RT 1: 329-3163 bp Neighborhood of RT #1 [329, 3163] RVT-Retrons Nuc_deoxyrib_tr Feature: gene Location: 329-1738 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 878-1487 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 878-14 87 bp Feature: gene Location: 2033-2497 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 2057-2342 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 2057-234 2 bp Feature: gene Location: 2519-3163 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, Nuc_deoxyrib_tr (pfam05014)

Seq: DIYT01000048.1 TPA_asm: Cyanobacteria bacterium UBA6047 UBA6047_contig_66, whole genome shotgun sequence (66336 bp)
Overview 1 RT 1: 6365-13342 bp 2 RT 2: 55308-58011 bp Neighborhood of RT #1 [6365, 13342] XisI XisH TPR RVT-Retrons acnB Neighborhood of RT #2 [55308, 58016] TetR_N TetR_C_34 retinol-DH_like_SDR_c_like RVT-GII MEKHLA Feature: gene Location: 6365-6706 bp Feature: domain Description: XisI Location: 6368-6701 bp Feature: domain Description: XisI Location: 6368-6701 bp Feature: gene Location: 6694-7113 bp Feature: domain Description: XisH Location: 6697-7099 bp Feature: domain Description: XisH Location: 6697-7099 bp Feature: gene Location: 7626-9422 bp Feature: domain Description: TPR Location: 7653-7875 bp Feature: domain Description: TPR Location: 765 3-7875 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8292-8916 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8292-8916 bp Feature: gene Location: 9483-12074 bp Feature: domain Description: acnB Location: 9489-12018 bp Feature: domain Description: acnB Location: 9489-12018 bp Feature: gene Location: 12338-13342 bp Feature: gene Location: 55308-55949 bp Feature: domain Description: TetR_N Location: 55365-55494 bp Feature: domain Description: TetR_N Location: 5 5 365 -5 5 494 bp Feature: domain Description: TetR_C_34 Location: 55578-55935 bp Feature: domain Description: TetR_C_34 Location: 5 5 5 78-5 5 935 bp Feature: gene Location: 56094-57023 bp Feature: domain Description: retinol-DH_like_SDR_c_like Location: 56181-56973 bp Feature: domain Description: retinol-DH_like_SDR_c_like Location: 5 6181-5 6973 bp Feature: gene Location: 57059-57298 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57119-57278 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 7119-5 7278 bp Feature: gene Location: 57358-57528 bp Feature: gene Location: 57552-58016 bp Feature: domain Description: MEKHLA Location: 57591-58011 bp Feature: domain Description: MEKHLA Location: 5 75 91-5 8011 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT XisI (pfam08869), XisH (pfam08814), TPR (smart00028), RVT-Retrons, acnB (TIGR00117), TetR_N (pfam00440), TetR_C_34 (pfam17929), retinol-DH_like_SDR_c_like (cd05327), RVT-GII, MEKHLA (pfam08670)

Seq: DIYT01000100.1 TPA_asm: Cyanobacteria bacterium UBA6047 UBA6047_contig_751, whole genome shotgun sequence (8165 bp)
Overview 1 RT 1: 3-4537 bp Neighborhood of RT #1 [3, 5160] K_oxygenase KOG3010 RVT-UG7 AAA_24 Feature: gene Location: 3-1106 bp Feature: domain Description: K_oxygenase Location: 33-1008 bp Feature: domain Description: K_oxygenase Location: 33-1008 bp Feature: gene Location: 1290-2123 bp Feature: domain Description: KOG3010 Location: 1389-1884 bp Feature: domain Description: KOG3010 Location: 1389-1884 bp Feature: gene Location: 2350-3984 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 2722-3142 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 2722-3142 bp Feature: gene Location: 4137-4289 bp Feature: gene Location: 4372-5160 bp Feature: domain Description: AAA_24 Location: 4393-4537 bp Feature: domain Description: AAA_24 Location: 4393-4537 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT K_oxygenase (pfam13434), KOG3010 (KOG3010, Methyltransferase ), RVT-UG7, AAA_24 (pfam13479)

Seq: DIYT01000075.1 TPA_asm: Cyanobacteria bacterium UBA6047 UBA6047_contig_85, whole genome shotgun sequence (29835 bp)
Overview 1 RT 1: 3-2949 bp Neighborhood of RT #1 [3, 2990] RVT_N RVT-GII GIIM McrA BaeS Feature: gene Location: 3-1757 bp Feature: domain Description: RVT_N Location: 48-294 bp Feature: domain Description: RVT_N Location: 48-294 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 336-1026 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 336-1026 bp Feature: domain Description: GIIM Note: maturase Location: 1131-1362 bp Feature: domain Description: GIIM Note: maturase Location: 1131-1362 bp Feature: domain Description: McrA Location: 1383-1686 bp Feature: domain Description: McrA Location: 1383-1686 bp Feature: gene Location: 2330-2500 bp Feature: gene Location: 2568-2990 bp Feature: domain Description: BaeS Location: 2592-2949 bp Feature: domain Description: BaeS Location: 2592-2949 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), BaeS (COG0642)