myRT

myRT report for GCA_002431395.1_ASM243139v1

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Seq: DJEU01000042.1 TPA_asm: Lachnoclostridium sp. UBA5890 UBA5890_contig_2452, whole genome shotgun sequence (43860 bp)
Overview 1 RT 1: 12639-21284 bp Neighborhood of RT #1 [12639, 21337] RHS_repeat RHS_repeat Glug Glug Glug FN3 RVT-GII GIIM LRR_3 LRR_3 LRR_3 COG1373 Feature: gene Location: 12639-13553 bp Feature: domain Description: RHS_repeat Location: 13233-13281 bp Feature: domain Description: RHS_repeat Location: 1 3233-1 3281 bp Feature: domain Description: RHS_repeat Location: 13356-13449 bp Feature: domain Description: RHS_repeat Location: 1 3356-1 3449 bp Feature: gene Location: 13832-16012 bp Feature: domain Description: Glug Location: 14342-14405 bp Feature: domain Description: Glug Location: 1 4342-1 4405 bp Feature: domain Description: Glug Location: 14462-14534 bp Feature: domain Description: Glug Location: 1 4462-1 4534 bp Feature: domain Description: Glug Location: 14645-14711 bp Feature: domain Description: Glug Location: 1 4645-1 471 1 bp Feature: domain Description: FN3 Location: 15764-15965 bp Feature: domain Description: FN3 Location: 1 5764-1 5965 bp Feature: gene Location: 16189-17583 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16507-17131 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 6507-1 71 31 bp Feature: domain Description: GIIM Note: maturase Location: 17188-17398 bp Feature: domain Description: GIIM Note: maturase Location: 1 71 88-1 7398 bp Feature: gene Location: 18115-19824 bp Feature: domain Description: LRR_3 Location: 18385-18592 bp Feature: domain Description: LRR_3 Location: 1 8385-1 8592 bp Feature: domain Description: LRR_3 Location: 18637-19015 bp Feature: domain Description: LRR_3 Location: 1 8637-1 901 5 bp Feature: domain Description: LRR_3 Location: 19501-19756 bp Feature: domain Description: LRR_3 Location: 1 9501 -1 9756 bp Feature: gene Location: 19976-21337 bp Feature: domain Description: COG1373 Location: 19991-21284 bp Feature: domain Description: COG1 373 Location: 1 9991 -21 284 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RHS_repeat (pfam05593), Glug (pfam07581), FN3 (smart00060), RVT-GII, GIIM (pfam08388), LRR_3 (sd00036), COG1373 (Predicted ATPase, AAA+ superfamily )

Seq: DJEU01000066.1 TPA_asm: Lachnoclostridium sp. UBA5890 UBA5890_contig_365, whole genome shotgun sequence (107575 bp)
Overview 1 RT 1: 100878-106889 bp Neighborhood of RT #1 [100878, 106900] T4SS-DNA_transf RVT-GII KOG4768 VirD4 Tra8 Feature: gene Location: 100878-101597 bp Feature: domain Description: T4SS-DNA_transf Location: 101235-101562 bp Feature: domain Description: T4SS-DNA_transf Location: 1012 35-101562 bp Feature: gene Location: 101868-102002 bp Feature: gene Location: 102286-104100 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 102595-103297 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 102 595-1032 97 bp Feature: domain Description: KOG4768 Location: 103411-103534 bp Feature: domain Description: KOG4768 Location: 103411-103534 bp Feature: gene Location: 104226-105662 bp Feature: domain Description: VirD4 Location: 104355-105132 bp Feature: domain Description: VirD4 Location: 104355-105132 bp Feature: gene Location: 105869-106900 bp Feature: domain Description: Tra8 Location: 105881-106889 bp Feature: domain Description: Tra8 Location: 105881-106889 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT T4SS-DNA_transf (pfam02534), RVT-GII, KOG4768 (KOG4768, Mitochondrial mRNA maturase ), VirD4 (COG3505), Tra8 (COG2826)