myRT

myRT report for GCA_002431705.1_ASM243170v1

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Seq: DJHH01000108.1 TPA_asm: Firmicutes bacterium UBA5824 UBA5824_contig_3312, whole genome shotgun sequence (4587 bp)
Overview 1 RT 1: 58-2751 bp Neighborhood of RT #1 [58, 2759] RVT-GII GIIM group_II_RT_mat PRK08311 Feature: gene Location: 58-1296 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 262-913 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 262-91 3 bp Feature: domain Description: GIIM Note: maturase Location: 994-1210 bp Feature: domain Description: GIIM Note: maturase Location: 994-1 21 0 bp Feature: gene Location: 1415-1960 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1421-1766 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1 421 -1 766 bp Feature: gene Location: 2106-2759 bp Feature: domain Description: PRK08311 Location: 2118-2751 bp Feature: domain Description: PRK0831 1 Location: 21 1 8-2751 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), PRK08311 (RNA polymerase sigma factor SigI), RVT-GII, GIIM (pfam08388)

Seq: DJHH01000006.1 TPA_asm: Firmicutes bacterium UBA5824 UBA5824_contig_5768, whole genome shotgun sequence (12816 bp)
Overview 1 RT 1: 6431-9691 bp Neighborhood of RT #1 [6431, 9708] HTH_XRE RVT-CRISPR-like HTH_17 CLB_0814_fam Feature: gene Location: 6431-7186 bp Feature: domain Description: HTH_XRE Location: 6473-6644 bp Feature: domain Description: HTH_XRE Location: 6473-6644 bp Feature: gene Location: 7198-7398 bp Feature: gene Location: 7406-8416 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 7526-8114 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 752 6-8114 bp Feature: gene Location: 8980-9156 bp Feature: domain Description: HTH_17 Location: 9001-9148 bp Feature: domain Description: HTH_17 Location: 9001-9148 bp Feature: gene Location: 9448-9708 bp Feature: domain Description: CLB_0814_fam Location: 9481-9691 bp Feature: domain Description: CLB_0814_fam Location: 9481-9691 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-CRISPR, HTH_17 (pfam12728), CLB_0814_fam (TIGR04540)

Seq: DJHH01000149.1 TPA_asm: Firmicutes bacterium UBA5824 UBA5824_contig_717, whole genome shotgun sequence (17048 bp)
Overview 1 RT 1: 329-3906 bp Neighborhood of RT #1 [329, 3941] RVT-GII GIIM RVT-UNC COG2936 Feature: gene Location: 329-1741 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 680-1298 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 680-1298 bp Feature: domain Description: GIIM Note: maturase Location: 1352-1562 bp Feature: domain Description: GIIM Note: maturase Location: 13 52-1562 bp Feature: gene Location: 1838-2797 bp Feature: domain Description: RVT-UNC Note: UNC RT Location: 1844-2786 bp Feature: domain Description: RVT-UNC Note: UNC RT Location: 1844-2786 bp Feature: gene Location: 2775-3941 bp Feature: domain Description: COG2936 Location: 3243-3906 bp Feature: domain Description: COG293 6 Location: 3 243 -3 906 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT /NonD (TIGR00976), COG2936 (Predicted acyl esterase ), RVT-GII, GIIM (pfam08388)