myRT

myRT report for GCA_002432785.1_ASM243278v1

Download annotations/find similar RTs

Seq: DJGS01000003.1 TPA_asm: Pseudomonas stutzeri isolate UBA5840 UBA5840_contig_28, whole genome shotgun sequence (43824 bp)
Overview 1 RT 1: 8052-13665 bp Neighborhood of RT #1 [8052, 13665] RVT-UG7 COG3666 DDE_Tnp_1_6 Feature: gene Location: 8052-8618 bp Feature: gene Location: 8719-9357 bp Feature: gene Location: 9431-11200 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 9929-10349 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 9929-1 0349 bp Feature: gene Location: 11482-12879 bp Feature: domain Description: COG3666 Location: 11551-11998 bp Feature: domain Description: COG3666 Location: 1 1 551 -1 1 998 bp Feature: domain Description: DDE_Tnp_1_6 Location: 12466-12841 bp Feature: domain Description: DDE_Tnp_1 _6 Location: 1 2466-1 2841 bp Feature: gene Location: 13267-13665 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG7, COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751)

Seq: DJGS01000014.1 TPA_asm: Pseudomonas stutzeri isolate UBA5840 UBA5840_contig_6, whole genome shotgun sequence (742933 bp)
Overview 1 RT 1: 438963-446426 bp Neighborhood of RT #1 [438963, 446434] lipid_A_lpxH PRK10791 RVT_N RVT-GII YkfC HNHc PRK05347 cysS Feature: gene Location: 438963-439685 bp Feature: domain Description: lipid_A_lpxH Location: 438972-439656 bp Feature: domain Description: lipid_A_lpxH Location: 438972 -439656 bp Feature: gene Location: 439692-440282 bp Feature: domain Description: PRK10791 Location: 439791-440277 bp Feature: domain Description: PRK10791 Location: 439791-4402 77 bp Feature: gene Location: 441383-443122 bp Feature: domain Description: RVT_N Location: 441443-441686 bp Feature: domain Description: RVT_N Location: 441443-441686 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 441734-442385 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 441734-442 385 bp Feature: domain Description: YkfC Location: 442607-442739 bp Feature: domain Description: YkfC Location: 442 607-442 739 bp Feature: domain Description: HNHc Note: nucleases Location: 442919-443075 bp Feature: domain Description: HNHc Note: nucleases Location: 442 919-443075 bp Feature: gene Location: 443382-445049 bp Feature: domain Description: PRK05347 Location: 443397-445044 bp Feature: domain Description: PRK05347 Location: 443397-445044 bp Feature: gene Location: 445049-446434 bp Feature: domain Description: cysS Location: 445052-446426 bp Feature: domain Description: cysS Location: 445052 -44642 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT lipid_A_lpxH (TIGR01854), PRK10791 (peptidylprolyl isomerase B), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), PRK05347 (glutaminyl-tRNA synthetase; Provisional), cysS (TIGR00435)