myRT

myRT report for GCA_002435545.1_ASM243554v1

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Seq: DJNB01000230.1 TPA_asm: Lachnoclostridium sp. UBA6475 UBA6475_contig_13499, whole genome shotgun sequence (3726 bp)
Overview 1 RT 1: 311-3366 bp Neighborhood of RT #1 [311, 3366] Cas2_I_II_III RVT-CRISPR cas1_HMARI Feature: gene Location: 311-499 bp Feature: domain Description: Cas2_I_II_III Location: 317-473 bp Feature: domain Description: Cas2_I_II_III Location: 31 7-473 bp Feature: gene Location: 513-2429 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 729-1305 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 729-1 305 bp Feature: domain Description: cas1_HMARI Location: 1440-2418 bp Feature: domain Description: cas1 _HMARI Location: 1 440-241 8 bp Feature: gene Location: 3184-3366 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), RVT-CRISPR, cas1_HMARI (TIGR03641)

Seq: DJNB01000145.1 TPA_asm: Lachnoclostridium sp. UBA6475 UBA6475_contig_30226, whole genome shotgun sequence (4178 bp)
Overview 1 RT 1: 3-2915 bp Neighborhood of RT #1 [3, 2977] Arm-DNA-bind_4 RVT-GII Intron_maturas2 HTH_XRE PemK_toxin Feature: gene Location: 3-227 bp Feature: domain Description: Arm-DNA-bind_4 Location: 36-159 bp Feature: domain Description: Arm-DNA-bind_4 Location: 36-159 bp Feature: gene Location: 651-1595 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 690-1167 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 690-1167 bp Feature: domain Description: Intron_maturas2 Location: 1242-1524 bp Feature: domain Description: Intron_maturas2 Location: 12 42 -152 4 bp Feature: gene Location: 1750-2055 bp Feature: domain Description: HTH_XRE Location: 1867-2038 bp Feature: domain Description: HTH_XRE Location: 1867-2 038 bp Feature: gene Location: 2570-2977 bp Feature: domain Description: PemK_toxin Location: 2600-2915 bp Feature: domain Description: PemK_toxin Location: 2 600-2 915 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_4 (pfam14657), RVT-GII, Intron_maturas2 (pfam01348), HTH_XRE (smart00530), PemK_toxin (pfam02452)

Seq: DJNB01000140.1 TPA_asm: Lachnoclostridium sp. UBA6475 UBA6475_contig_4405, whole genome shotgun sequence (21705 bp)
Overview 1 RT 1: 1064-5760 bp Neighborhood of RT #1 [1064, 5801] YsxB-like rplU RVT-GII COG5545 DUF2815 Feature: gene Location: 1064-1381 bp Feature: domain Description: YsxB-like Location: 1067-1373 bp Feature: domain Description: YsxB-like Location: 1067-13 73 bp Feature: gene Location: 1419-1727 bp Feature: domain Description: rplU Location: 1422-1725 bp Feature: domain Description: rplU Location: 1422-1725 bp Feature: gene Location: 1860-3998 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2064-2685 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2064-2685 bp Feature: gene Location: 3955-5262 bp Feature: domain Description: COG5545 Location: 3982-4981 bp Feature: domain Description: COG5545 Location: 3 982-4981 bp Feature: gene Location: 5259-5801 bp Feature: domain Description: DUF2815 Location: 5292-5760 bp Feature: domain Description: DUF2815 Location: 5292-5760 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YsxB-like, rplU (PRK05573), RVT-GII, COG5545 (Predicted P-loop ATPase and inactivated derivatives ), DUF2815 (pfam10991)

Seq: DJNB01000007.1 TPA_asm: Lachnoclostridium sp. UBA6475 UBA6475_contig_5702, whole genome shotgun sequence (16538 bp)
Overview 1 RT 1: 13670-16535 bp Neighborhood of RT #1 [13670, 16537] PRK11823 RVT-GII Feature: gene Location: 13670-14968 bp Feature: domain Description: PRK11823 Location: 13739-14942 bp Feature: domain Description: PRK11823 Location: 13739-14 94 2 bp Feature: gene Location: 14961-15395 bp Feature: gene Location: 15983-16537 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16301-16535 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16301-16535 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK11823 (DNA repair protein RadA; Provisional), RVT-GII

Seq: DJNB01000123.1 TPA_asm: Lachnoclostridium sp. UBA6475 UBA6475_contig_8301, whole genome shotgun sequence (31031 bp)
Overview 1 RT 1: 25331-30982 bp Neighborhood of RT #1 [25331, 30982] AmyAc_euk_bac_CMD_like RVT-GII GIIM Feature: gene Location: 25331-26686 bp Feature: domain Description: AmyAc_euk_bac_CMD_like Location: 25349-26450 bp Feature: domain Description: AmyAc_euk_bac_CMD_like Location: 25 349-2645 0 bp Feature: gene Location: 26811-29087 bp Feature: gene Location: 29220-30632 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29571-30192 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 295 71-30192 bp Feature: domain Description: GIIM Note: maturase Location: 30243-30471 bp Feature: domain Description: GIIM Note: maturase Location: 30243-30471 bp Feature: gene Location: 30689-30982 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AmyAc_euk_bac_CMD_like (cd11353), RVT-GII, GIIM (pfam08388)

Seq: DJNB01000101.1 TPA_asm: Lachnoclostridium sp. UBA6475 UBA6475_contig_9788, whole genome shotgun sequence (9093 bp)
Overview 1 RT 1: 1-3536 bp Neighborhood of RT #1 [1, 3871] RVT-GII amt GlnK Beta_helix Feature: gene Location: 1-330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16-88 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16 -88 bp Feature: gene Location: 755-2536 bp Feature: domain Description: amt Location: 809-2015 bp Feature: domain Description: amt Location: 809-2015 bp Feature: domain Description: GlnK Location: 2192-2522 bp Feature: domain Description: GlnK Location: 2192-2522 bp Feature: gene Location: 2636-3871 bp Feature: domain Description: Beta_helix Location: 3056-3536 bp Feature: domain Description: Beta_helix Location: 3056 -3536 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, amt (TIGR00836), GlnK (COG0347), Beta_helix (pfam13229)