myRT

myRT report for GCA_002438405.1_ASM243840v1

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Seq: DJOE01000006.1 TPA_asm: Cyanobacteria bacterium UBA6446 UBA6446_contig_1353, whole genome shotgun sequence (136929 bp)
Overview 1 RT 1: 19325-22598 bp Neighborhood of RT #1 [19325, 22621] RVT-DGRs PHA00653 PHA00653 Feature: gene Location: 19325-19603 bp Feature: gene Location: 19622-19939 bp Feature: gene Location: 19911-20945 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 20118-20709 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 201 1 8-20709 bp Feature: gene Location: 21035-21232 bp Feature: gene Location: 21251-22621 bp Feature: domain Description: PHA00653 Location: 21581-22106 bp Feature: domain Description: PHA00653 Location: 21 581 -221 06 bp Feature: domain Description: PHA00653 Location: 22154-22598 bp Feature: domain Description: PHA00653 Location: 221 54-22598 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, PHA00653 (mtd;major tropism determinant)

Seq: DJOE01000023.1 TPA_asm: Cyanobacteria bacterium UBA6446 UBA6446_contig_161, whole genome shotgun sequence (628063 bp)
Overview 1 RT 1: 477713-482145 bp Neighborhood of RT #1 [477713, 482145] SR_ResInv RVT-Retrons RVT-Retrons Feature: gene Location: 477713-478318 bp Feature: domain Description: SR_ResInv Location: 477740-478142 bp Feature: domain Description: SR_ResInv Location: 477740-478142 bp Feature: gene Location: 478391-479527 bp Feature: gene Location: 480438-480869 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 480594-480864 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 480594-480864 bp Feature: gene Location: 480870-481136 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 480873-481119 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 480873-481119 bp Feature: gene Location: 481211-481387 bp Feature: gene Location: 481375-482145 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SR_ResInv (cd03768), RVT-Retrons

Seq: DJOE01000009.1 TPA_asm: Cyanobacteria bacterium UBA6446 UBA6446_contig_1763, whole genome shotgun sequence (168334 bp)
Overview 1 RT 1: 17577-20958 bp Neighborhood of RT #1 [17577, 20969] vsr RVT-Retrons Phage_int_SAM_5 Feature: gene Location: 17577-18059 bp Feature: domain Description: vsr Location: 17649-18000 bp Feature: domain Description: vsr Location: 17649-18000 bp Feature: gene Location: 18281-18502 bp Feature: gene Location: 18521-19444 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 18650-19175 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 18650-19175 bp Feature: gene Location: 19772-20359 bp Feature: gene Location: 20595-20969 bp Feature: domain Description: Phage_int_SAM_5 Location: 20724-20958 bp Feature: domain Description: Phage_int_SAM_5 Location: 20724-20958 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT vsr (TIGR00632), RVT-Retrons, Phage_int_SAM_5 (pfam13102)

Seq: DJOE01000001.1 TPA_asm: Cyanobacteria bacterium UBA6446 UBA6446_contig_961, whole genome shotgun sequence (44084 bp)
Overview 1 RT 1: 1400-7900 bp Neighborhood of RT #1 [1400, 8052] Recombinase PinE RVT-UG5 nitrilase Mrr HTH_XRE Feature: gene Location: 1400-2452 bp Feature: domain Description: Recombinase Location: 1406-1646 bp Feature: domain Description: Recombinase Location: 14 06-164 6 bp Feature: gene Location: 2443-3006 bp Feature: domain Description: PinE Location: 2461-2968 bp Feature: domain Description: PinE Location: 24 61-2968 bp Feature: gene Location: 3584-6718 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4115-4640 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4 115-4 64 0 bp Feature: domain Description: nitrilase Location: 5999-6635 bp Feature: domain Description: nitrilase Location: 5999-6635 bp Feature: gene Location: 6739-7719 bp Feature: domain Description: Mrr Location: 6799-7711 bp Feature: domain Description: Mrr Location: 6799-7711 bp Feature: gene Location: 7732-8052 bp Feature: domain Description: HTH_XRE Location: 7762-7900 bp Feature: domain Description: HTH_XRE Location: 7762-7900 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Recombinase (pfam07508), PinE (COG1961), RVT-UG5, nitrilase (cl11424), Mrr (COG1715), HTH_XRE (smart00530)