myRT

myRT report for GCA_002439135.1_ASM243913v1

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Seq: DJSX01000044.1 TPA_asm: Pseudomonas sp. UBA6323 UBA6323_contig_134, whole genome shotgun sequence (6337 bp)
Overview 1 RT 1: 2-6328 bp Neighborhood of RT #1 [2, 6336] RVT-UNC KOG1200 KOG1200 aceE Feature: gene Location: 2-259 bp Feature: gene Location: 84-425 bp Feature: gene Location: 907-2652 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1324-1750 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1 324-1 750 bp Feature: domain Description: KOG1200 Location: 1882-2020 bp Feature: domain Description: KOG1 200 Location: 1 882-2020 bp Feature: domain Description: KOG1200 Location: 2251-2464 bp Feature: domain Description: KOG1 200 Location: 2251 -2464 bp Feature: gene Location: 2652-3632 bp Feature: gene Location: 3712-6336 bp Feature: domain Description: aceE Location: 3715-6328 bp Feature: domain Description: aceE Location: 371 5-6328 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG17/RVT-CRISPR/RVT-DGRs/RVT-UG19(RVT-UNC), KOG1200 (KOG1200, Mitochondrial/plastidial beta-ketoacyl-ACP reductase ), aceE (TIGR00759)

Seq: DJSX01000053.1 TPA_asm: Pseudomonas sp. UBA6323 UBA6323_contig_512, whole genome shotgun sequence (53412 bp)
Overview 1 RT 1: 48376-53338 bp Neighborhood of RT #1 [48376, 53409] PqqL PqqL RVT_N RVT-GII Feature: gene Location: 48376-49836 bp Feature: domain Description: PqqL Location: 48526-49783 bp Feature: domain Description: PqqL Location: 4852 6-49783 bp Feature: gene Location: 49833-51200 bp Feature: domain Description: PqqL Location: 49911-51189 bp Feature: domain Description: PqqL Location: 49911-51189 bp Feature: gene Location: 52387-53409 bp Feature: domain Description: RVT_N Location: 52396-52639 bp Feature: domain Description: RVT_N Location: 52 396-52 639 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52687-53338 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 687-53338 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PqqL (COG0612), RVT_N (pfam13655), RVT-GII

Seq: DJSX01000018.1 TPA_asm: Pseudomonas sp. UBA6323 UBA6323_contig_623, whole genome shotgun sequence (35395 bp)
Overview 1 RT 1: 1-3037 bp Neighborhood of RT #1 [1, 3037] RVT_N RVT-GII PRK00024 Feature: gene Location: 1-1077 bp Feature: domain Description: RVT_N Location: 61-304 bp Feature: domain Description: RVT_N Location: 61-3 04 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 352-1003 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 52-1003 bp Feature: gene Location: 2209-2883 bp Feature: domain Description: PRK00024 Location: 2212-2881 bp Feature: domain Description: PRK00024 Location: 2212-2881 bp Feature: gene Location: 2885-3037 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, PRK00024 (DNA repair protein RadC)