myRT

myRT report for GCA_002439245.1_ASM243924v1

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Seq: DJTN01000123.1 TPA_asm: Pseudomonas sp. UBA6307 UBA6307_contig_2212, whole genome shotgun sequence (10860 bp)
Overview 1 RT 1: 3-4064 bp Neighborhood of RT #1 [3, 4064] RVT_N RVT-GII GIIM HNHc PRK00024 Feature: gene Location: 3-170 bp Feature: gene Location: 375-2108 bp Feature: domain Description: RVT_N Location: 435-678 bp Feature: domain Description: RVT_N Location: 435-678 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 726-1377 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 726-1 377 bp Feature: domain Description: GIIM Note: maturase Location: 1455-1683 bp Feature: domain Description: GIIM Note: maturase Location: 1 455-1 683 bp Feature: domain Description: HNHc Note: nucleases Location: 1911-2067 bp Feature: domain Description: HNHc Note: nucleases Location: 1 91 1 -2067 bp Feature: gene Location: 3236-3910 bp Feature: domain Description: PRK00024 Location: 3239-3908 bp Feature: domain Description: PRK00024 Location: 3239-3908 bp Feature: gene Location: 3912-4064 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK00024 (DNA repair protein RadC)

Seq: DJTN01000059.1 TPA_asm: Pseudomonas sp. UBA6307 UBA6307_contig_341, whole genome shotgun sequence (6425 bp)
Overview 1 RT 1: 1-6155 bp Neighborhood of RT #1 [1, 6163] RVT-UNC KOG1200 KOG1200 aceE Feature: gene Location: 1-198 bp Feature: gene Location: 758-2503 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1175-1601 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1175-1601 bp Feature: domain Description: KOG1200 Location: 1733-1871 bp Feature: domain Description: KOG12 00 Location: 1733-1871 bp Feature: domain Description: KOG1200 Location: 2102-2315 bp Feature: domain Description: KOG12 00 Location: 2 102 -2 315 bp Feature: gene Location: 2503-3483 bp Feature: gene Location: 3563-6163 bp Feature: domain Description: aceE Location: 3569-6155 bp Feature: domain Description: aceE Location: 3569-6155 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG17/RVT-CRISPR/RVT-DGRs/RVT-UG19(RVT-UNC), KOG1200 (KOG1200, Mitochondrial/plastidial beta-ketoacyl-ACP reductase ), aceE (TIGR00759)