myRT

myRT report for GCA_002440465.1_ASM244046v1

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Seq: DJTZ01000284.1 TPA_asm: Pseudomonas sp. UBA6295 UBA6295_contig_2160, whole genome shotgun sequence (9782 bp)
Overview 1 RT 1: 3-4753 bp Neighborhood of RT #1 [3, 4803] RVT-GII YkfC HNHc MrcA PRK07232 Feature: gene Location: 3-1352 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-627 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-627 bp Feature: domain Description: YkfC Location: 825-930 bp Feature: domain Description: YkfC Location: 825-930 bp Feature: domain Description: HNHc Note: nucleases Location: 1131-1296 bp Feature: domain Description: HNHc Note: nucleases Location: 1 1 31 -1 296 bp Feature: gene Location: 1406-3934 bp Feature: domain Description: MrcA Location: 1487-3860 bp Feature: domain Description: MrcA Location: 1 487-3860 bp Feature: gene Location: 4051-4803 bp Feature: domain Description: PRK07232 Location: 4054-4753 bp Feature: domain Description: PRK07232 Location: 4054-4753 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MrcA (COG5009), RVT-GII, YkfC (COG3344), HNHc (smart00507)

Seq: DJTZ01000132.1 TPA_asm: Pseudomonas sp. UBA6295 UBA6295_contig_465, whole genome shotgun sequence (46023 bp)
Overview 1 RT 1: 14736-18640 bp Neighborhood of RT #1 [14736, 18640] DUF1566 Avd_like RVT-DGRs ASCH_yqfb_like ASCH_yqfb_like Feature: gene Location: 14736-15308 bp Feature: domain Description: DUF1566 Location: 15066-15294 bp Feature: domain Description: DUF1566 Location: 15066-152 94 bp Feature: gene Location: 15361-15714 bp Feature: domain Description: Avd_like Location: 15388-15694 bp Feature: domain Description: Avd_like Location: 15388-15694 bp Feature: gene Location: 15913-17070 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 16162-16846 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 16162 -16846 bp Feature: gene Location: 17152-17874 bp Feature: domain Description: ASCH_yqfb_like Location: 17179-17257 bp Feature: domain Description: ASCH_yqfb_like Location: 17179-172 57 bp Feature: domain Description: ASCH_yqfb_like Location: 17554-17629 bp Feature: domain Description: ASCH_yqfb_like Location: 17554-1762 9 bp Feature: gene Location: 18134-18640 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs, ASCH_yqfb_like (cd06552)

Seq: DJTZ01000039.1 TPA_asm: Pseudomonas sp. UBA6295 UBA6295_contig_7268, whole genome shotgun sequence (4554 bp)
Overview 1 RT 1: 172-4097 bp Neighborhood of RT #1 [172, 4126] RVT_N RVT-GII GIIM LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 TnpB_IS66 Feature: gene Location: 172-1833 bp Feature: RT Description: RVT_N Location: 217-460 bp Feature: RT Description: RVT_N Location: 217-460 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 505-1141 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 505-1141 bp Feature: domain Description: GIIM Note: maturase Location: 1201-1426 bp Feature: domain Description: GIIM Note: maturase Location: 1201-1426 bp Feature: gene Location: 2390-3727 bp Feature: domain Description: LZ_Tnp_IS66 Location: 2531-2735 bp Feature: domain Description: LZ_Tnp_IS66 Location: 253 1-273 5 bp Feature: domain Description: zf-IS66 Location: 2765-2891 bp Feature: domain Description: zf-IS66 Location: 2765-2891 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2933-3707 bp Feature: domain Description: DDE_Tnp_IS66 Location: 293 3 -3 707 bp Feature: gene Location: 3791-4126 bp Feature: domain Description: TnpB_IS66 Location: 3809-4097 bp Feature: domain Description: TnpB_IS66 Location: 3 809-4097 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), TnpB_IS66 (pfam05717)

Seq: DJTZ01000251.1 TPA_asm: Pseudomonas sp. UBA6295 UBA6295_contig_7335, whole genome shotgun sequence (7940 bp)
Overview 1 RT 1: 4981-7882 bp Neighborhood of RT #1 [4981, 7938] fmt def RVT-GII YkfC HNHc Feature: gene Location: 4981-5913 bp Feature: domain Description: fmt Location: 4984-5896 bp Feature: domain Description: fmt Location: 4 984 -5896 bp Feature: gene Location: 5974-6480 bp Feature: domain Description: def Location: 5977-6463 bp Feature: domain Description: def Location: 5977-64 63 bp Feature: gene Location: 6589-7938 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6592-7213 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6592-7213 bp Feature: domain Description: YkfC Location: 7420-7573 bp Feature: domain Description: YkfC Location: 74 20-7573 bp Feature: domain Description: HNHc Note: nucleases Location: 7726-7882 bp Feature: domain Description: HNHc Note: nucleases Location: 7726-7882 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT fmt (TIGR00460), def (PRK00150), RVT-GII, YkfC (COG3344), HNHc (smart00507)