myRT

myRT report for GCA_002442245.1_ASM244224v1

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Seq: NXOX01000116.1 Escherichia coli strain 48_Esco_HA-DE 70235370_contig_116, whole genome shotgun sequence (16307 bp)
Overview 1 RT 1: 10035-14017 bp Neighborhood of RT #1 [10035, 14043] Asparaginase_2 RVT-GII DcuC Feature: gene Location: 10035-11066 bp Feature: domain Description: Asparaginase_2 Location: 10125-11058 bp Feature: domain Description: Asparaginase_2 Location: 1 01 25-1 1 058 bp Feature: gene Location: 11393-11542 bp Feature: gene Location: 11590-12036 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11896-11998 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 896-1 1 998 bp Feature: gene Location: 12258-12629 bp Feature: gene Location: 12682-14043 bp Feature: domain Description: DcuC Location: 12685-14017 bp Feature: domain Description: DcuC Location: 1 2685-1 401 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Asparaginase_2 (pfam01112), RVT-GII, DcuC (TIGR00771)

Seq: NXOX01000013.1 Escherichia coli strain 48_Esco_HA-DE 70235370_contig_13, whole genome shotgun sequence (111842 bp)
Overview 1 RT 1: 82773-88804 bp Neighborhood of RT #1 [82773, 88804] AbiEii AbiEi_3_N AbiEi_3 RVT-UG5 nitrilase Phage_ASH Feature: gene Location: 82773-83693 bp Feature: domain Description: AbiEii Location: 82815-83556 bp Feature: domain Description: AbiEii Location: 82 815-83556 bp Feature: gene Location: 83680-84483 bp Feature: domain Description: AbiEi_3_N Location: 83713-83974 bp Feature: domain Description: AbiEi_3_N Location: 83713-83974 bp Feature: domain Description: AbiEi_3 Location: 83986-84442 bp Feature: domain Description: AbiEi_3 Location: 83986-84442 bp Feature: gene Location: 84778-87987 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 85306-85795 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 85306-85795 bp Feature: domain Description: nitrilase Location: 87301-87898 bp Feature: domain Description: nitrilase Location: 87301-87898 bp Feature: gene Location: 88148-88288 bp Feature: domain Description: Phage_ASH Location: 88175-88268 bp Feature: domain Description: Phage_ASH Location: 88175-882 68 bp Feature: gene Location: 88334-88804 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), RVT-UG5, nitrilase (cl11424), Phage_ASH (pfam10554)

Seq: NXOX01000045.1 Escherichia coli strain 48_Esco_HA-DE 70235370_contig_45, whole genome shotgun sequence (51301 bp)
Overview 1 RT 1: 23556-27847 bp Neighborhood of RT #1 [23556, 27847] YesM RVT-GII GIIM RVT-GII Feature: gene Location: 23556-24818 bp Feature: domain Description: YesM Location: 24069-24810 bp Feature: domain Description: YesM Location: 24069-24810 bp Feature: gene Location: 24848-25018 bp Feature: gene Location: 25368-25889 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25374-25656 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 253 74-25656 bp Feature: domain Description: GIIM Note: maturase Location: 25704-25884 bp Feature: domain Description: GIIM Note: maturase Location: 25704-25884 bp Feature: gene Location: 25917-26456 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26247-26325 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26247-263 25 bp Feature: gene Location: 26487-26684 bp Feature: gene Location: 26942-27847 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388)

Seq: NXOX01000062.1 Escherichia coli strain 48_Esco_HA-DE 70235370_contig_62, whole genome shotgun sequence (1707 bp)
Overview 1 RT 1: 1-1705 bp Neighborhood of RT #1 [1, 1705] RVT-GII GIIM Feature: gene Location: 1-1392 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 274-1006 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 274 -1006 bp Feature: domain Description: GIIM Note: maturase Location: 1081-1279 bp Feature: domain Description: GIIM Note: maturase Location: 1081-1279 bp Feature: gene Location: 1346-1705 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)