myRT

myRT report for GCA_002442325.1_ASM244232v1

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Seq: NXOM01000001.1 Escherichia coli strain 37_Esco_HA-DE 70237117_contig_1, whole genome shotgun sequence (206958 bp)
Overview 1 RT 1: 137386-143417 bp Neighborhood of RT #1 [137386, 143417] AbiEii AbiEi_3_N AbiEi_3 RVT-UG5 nitrilase Phage_ASH Feature: gene Location: 137386-138306 bp Feature: domain Description: AbiEii Location: 137428-138169 bp Feature: domain Description: AbiEii Location: 1 37428-1 381 69 bp Feature: gene Location: 138293-139096 bp Feature: domain Description: AbiEi_3_N Location: 138326-138587 bp Feature: domain Description: AbiEi_3_N Location: 1 38326-1 38587 bp Feature: domain Description: AbiEi_3 Location: 138599-139055 bp Feature: domain Description: AbiEi_3 Location: 1 38599-1 39055 bp Feature: gene Location: 139391-142600 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 139919-140408 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1 3991 9-1 40408 bp Feature: domain Description: nitrilase Location: 141914-142511 bp Feature: domain Description: nitrilase Location: 1 41 91 4-1 4251 1 bp Feature: gene Location: 142761-142901 bp Feature: domain Description: Phage_ASH Location: 142788-142881 bp Feature: domain Description: Phage_ASH Location: 1 42788-1 42881 bp Feature: gene Location: 142947-143417 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), RVT-UG5, nitrilase (cl11424), Phage_ASH (pfam10554)

Seq: NXOM01000020.1 Escherichia coli strain 37_Esco_HA-DE 70237117_contig_20, whole genome shotgun sequence (497892 bp)
Overview 1 RT 1: 328480-332763 bp Neighborhood of RT #1 [328480, 332771] RVT-GII RVT-GII GIIM YesM Feature: gene Location: 328480-329385 bp Feature: gene Location: 329523-329714 bp Feature: gene Location: 329871-330410 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 330201-330279 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3302 01-3302 79 bp Feature: gene Location: 330438-330959 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 330444-330726 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 330444-33072 6 bp Feature: domain Description: GIIM Note: maturase Location: 330774-330954 bp Feature: domain Description: GIIM Note: maturase Location: 330774-330954 bp Feature: gene Location: 331281-331469 bp Feature: gene Location: 331509-332771 bp Feature: domain Description: YesM Location: 332022-332763 bp Feature: domain Description: YesM Location: 332 02 2 -332 763 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YesM (COG2972)

Seq: NXOM01000044.1 Escherichia coli strain 37_Esco_HA-DE 70237117_contig_44, whole genome shotgun sequence (1931 bp)
Overview 1 RT 1: 3-1594 bp Neighborhood of RT #1 [3, 1839] RVT-GII GIIM Feature: gene Location: 3-134 bp Feature: gene Location: 316-1839 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 589-1321 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 589-13 21 bp Feature: domain Description: GIIM Note: maturase Location: 1396-1594 bp Feature: domain Description: GIIM Note: maturase Location: 13 96-1594 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: NXOM01000054.1 Escherichia coli strain 37_Esco_HA-DE 70237117_contig_54, whole genome shotgun sequence (16295 bp)
Overview 1 RT 1: 10023-14005 bp Neighborhood of RT #1 [10023, 14031] Asparaginase_2 RVT-GII DcuC Feature: gene Location: 10023-11054 bp Feature: domain Description: Asparaginase_2 Location: 10113-11046 bp Feature: domain Description: Asparaginase_2 Location: 10113-1104 6 bp Feature: gene Location: 11381-11530 bp Feature: gene Location: 11578-12024 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11884-11986 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11884 -11986 bp Feature: gene Location: 12246-12617 bp Feature: gene Location: 12670-14031 bp Feature: domain Description: DcuC Location: 12673-14005 bp Feature: domain Description: DcuC Location: 12673-14 005 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Asparaginase_2 (pfam01112), RVT-GII, DcuC (TIGR00771)