myRT

myRT report for GCA_002442365.1_ASM244236v1

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Seq: NXOP01000019.1 Escherichia coli strain 40_Esco_HA-DE 70231740_contig_19, whole genome shotgun sequence (273145 bp)
Overview 1 RT 1: 22334-29581 bp Neighborhood of RT #1 [22334, 29601] proA PRK09692 RVT-UG3 RVT-UG8 PRK09678 Psu Feature: gene Location: 22334-23587 bp Feature: domain Description: proA Location: 22361-23552 bp Feature: domain Description: proA Location: 22361 -23552 bp Feature: gene Location: 23941-25119 bp Feature: domain Description: PRK09692 Location: 23947-25105 bp Feature: domain Description: PRK09692 Location: 23947-251 05 bp Feature: gene Location: 25121-26317 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 25406-25868 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 25406-25868 bp Feature: gene Location: 26321-28324 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 26816-27263 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 2681 6-27263 bp Feature: gene Location: 28773-29045 bp Feature: domain Description: PRK09678 Location: 28782-28950 bp Feature: domain Description: PRK09678 Location: 28782-28950 bp Feature: gene Location: 29047-29601 bp Feature: domain Description: Psu Location: 29071-29581 bp Feature: domain Description: Psu Location: 29071 -29581 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT proA (TIGR00407), PRK09692 (Integrase; provisional), RVT-UG3, RVT-UG8, PRK09678 (DNA-binding transcriptional regulator; Provisional), Psu (pfam07455)

Seq: NXOP01000030.1 Escherichia coli strain 40_Esco_HA-DE 70231740_contig_30, whole genome shotgun sequence (7756 bp)
Overview 1 RT 1: 2851-7293 bp Neighborhood of RT #1 [2851, 7295] umuC PRK10276 RVT-GII InsA DDE_Tnp_IS1 Feature: gene Location: 2851-4122 bp Feature: domain Description: umuC Location: 2854-4114 bp Feature: domain Description: umuC Location: 2 854-4114 bp Feature: gene Location: 4122-4934 bp Feature: domain Description: PRK10276 Location: 4554-4917 bp Feature: domain Description: PRK102 76 Location: 4554-4917 bp Feature: gene Location: 4959-6446 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5364-6054 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5364-6054 bp Feature: gene Location: 6598-6873 bp Feature: domain Description: InsA Location: 6601-6865 bp Feature: domain Description: InsA Location: 6601-6865 bp Feature: gene Location: 6792-7295 bp Feature: domain Description: DDE_Tnp_IS1 Location: 6903-7293 bp Feature: domain Description: DDE_Tnp_IS1 Location: 6903-72 93 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, InsA (COG3677), DDE_Tnp_IS1 (pfam03400)

Seq: NXOP01000072.1 Escherichia coli strain 40_Esco_HA-DE 70231740_contig_72, whole genome shotgun sequence (21649 bp)
Overview 1 RT 1: 309-3638 bp Neighborhood of RT #1 [309, 3700] PHA02517 RVT-GII GIIM PHA02517 DDE_Tnp_Tn3 Feature: gene Location: 309-437 bp Feature: gene Location: 287-766 bp Feature: domain Description: PHA02517 Location: 347-701 bp Feature: domain Description: PHA02517 Location: 3 47-701 bp Feature: gene Location: 1358-2881 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1631-2363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 163 1-23 63 bp Feature: domain Description: GIIM Note: maturase Location: 2438-2636 bp Feature: domain Description: GIIM Note: maturase Location: 243 8-263 6 bp Feature: gene Location: 2999-3445 bp Feature: domain Description: PHA02517 Location: 3002-3440 bp Feature: domain Description: PHA02517 Location: 3 002-3 440 bp Feature: gene Location: 3527-3700 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 3530-3638 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 3 53 0-3 63 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), DDE_Tnp_Tn3 (pfam01526)