myRT

myRT report for GCA_002442415.1_ASM244241v1

Download annotations/find similar RTs

Seq: NXOW01000044.1 Escherichia coli strain 47_Esco_HA-DE 70241250_contig_44, whole genome shotgun sequence (4572 bp)
Overview 1 RT 1: 943-4571 bp Neighborhood of RT #1 [943, 4571] APH PHA02517 RVT-GII GIIM Feature: gene Location: 943-1932 bp Feature: domain Description: APH Location: 1171-1924 bp Feature: domain Description: APH Location: 1 1 71 -1 924 bp Feature: gene Location: 1853-2182 bp Feature: domain Description: PHA02517 Location: 1856-2174 bp Feature: domain Description: PHA0251 7 Location: 1 856-21 74 bp Feature: gene Location: 2392-3915 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2665-3397 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2665-3397 bp Feature: domain Description: GIIM Note: maturase Location: 3472-3670 bp Feature: domain Description: GIIM Note: maturase Location: 3472-3670 bp Feature: gene Location: 4209-4571 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT APH (pfam01636), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: NXOW01000007.1 Escherichia coli strain 47_Esco_HA-DE 70241250_contig_7, whole genome shotgun sequence (145431 bp)
Overview 1 RT 1: 54627-62328 bp Neighborhood of RT #1 [54627, 62465] proA RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 54627-55880 bp Feature: domain Description: proA Location: 54654-55845 bp Feature: domain Description: proA Location: 54654-55845 bp Feature: gene Location: 56434-56904 bp Feature: gene Location: 57251-60460 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 57779-58268 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 57779-582 68 bp Feature: domain Description: nitrilase Location: 59774-60371 bp Feature: domain Description: nitrilase Location: 59774-60371 bp Feature: gene Location: 60755-61558 bp Feature: domain Description: AbiEi_3_N Location: 60788-61049 bp Feature: domain Description: AbiEi_3_N Location: 60788-61049 bp Feature: domain Description: AbiEi_3 Location: 61061-61517 bp Feature: domain Description: AbiEi_3 Location: 61061-61517 bp Feature: gene Location: 61545-62465 bp Feature: domain Description: AbiEii Location: 61587-62328 bp Feature: domain Description: AbiEii Location: 61587-62 32 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT proA (TIGR00407), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)

Seq: NXOW01000071.1 Escherichia coli strain 47_Esco_HA-DE 70241250_contig_71, whole genome shotgun sequence (65922 bp)
Overview 1 RT 1: 45628-49946 bp Neighborhood of RT #1 [45628, 49946] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 45628-45861 bp Feature: domain Description: DUF905 Location: 45658-45856 bp Feature: domain Description: DUF905 Location: 45658-45856 bp Feature: gene Location: 45918-46370 bp Feature: domain Description: PRK13732 Location: 45924-46368 bp Feature: domain Description: PRK13 73 2 Location: 45924-463 68 bp Feature: gene Location: 46565-48466 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46832-47663 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4683 2-47663 bp Feature: domain Description: Intron_maturas2 Location: 47777-48035 bp Feature: domain Description: Intron_maturas2 Location: 47777-4803 5 bp Feature: domain Description: HNHc Note: nucleases Location: 48209-48371 bp Feature: domain Description: HNHc Note: nucleases Location: 48209-483 71 bp Feature: gene Location: 49183-49464 bp Feature: gene Location: 49461-49946 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)