myRT

myRT report for GCA_002449215.1_ASM244921v1

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Seq: DKCQ01000060.1 TPA_asm: Prevotella sp. UBA6870 UBA6870_contig_1755, whole genome shotgun sequence (8826 bp)
Overview 1 RT 1: 3-7745 bp Neighborhood of RT #1 [3, 7745] Rhamnogalacturan_acetylesterase_like ebgA DUF4982 Glyco_hydro2_C5 F5_F8_type_C RVT-GII GIIM SusD-like_2 Feature: gene Location: 3-743 bp Feature: domain Description: Rhamnogalacturan_acetylesterase_like Location: 501-735 bp Feature: domain Description: Rhamnogalacturan_acetylesterase_like Location: 501 -735 bp Feature: gene Location: 998-4126 bp Feature: domain Description: ebgA Location: 1241-2291 bp Feature: domain Description: ebgA Location: 1 241 -2291 bp Feature: domain Description: DUF4982 Location: 2873-3011 bp Feature: domain Description: DUF4982 Location: 2873-301 1 bp Feature: domain Description: Glyco_hydro2_C5 Location: 3152-3293 bp Feature: domain Description: Glyco_hydro2_C5 Location: 31 52-3293 bp Feature: domain Description: F5_F8_type_C Location: 3710-3989 bp Feature: domain Description: F5_F8_type_C Location: 371 0-3989 bp Feature: gene Location: 4230-5045 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4362-4557 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4362-4557 bp Feature: domain Description: GIIM Note: maturase Location: 4617-4848 bp Feature: domain Description: GIIM Note: maturase Location: 461 7-4848 bp Feature: gene Location: 5411-6991 bp Feature: domain Description: SusD-like_2 Location: 5501-6749 bp Feature: domain Description: SusD-like_2 Location: 5501 -6749 bp Feature: gene Location: 7590-7745 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rhamnogalacturan_acetylesterase_like (cd01821), ebgA (PRK10340), DUF4982 (pfam16355), Glyco_hydro2_C5 (pfam18565), F5_F8_type_C (pfam00754), RVT-GII, GIIM (pfam08388), SusD-like_2 (pfam12771)

Seq: DKCQ01000047.1 TPA_asm: Prevotella sp. UBA6870 UBA6870_contig_32, whole genome shotgun sequence (63354 bp)
Overview 1 RT 1: 12824-22203 bp Neighborhood of RT #1 [12824, 22203] Laminin_G_3 CotH RVT-DGRs Feature: gene Location: 12824-14452 bp Feature: gene Location: 14536-19653 bp Feature: domain Description: Laminin_G_3 Location: 15190-15559 bp Feature: domain Description: Laminin_G_3 Location: 15190-15559 bp Feature: domain Description: CotH Location: 16411-16711 bp Feature: domain Description: CotH Location: 16411-16711 bp Feature: gene Location: 20066-21367 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 20279-20870 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2 02 79-2 0870 bp Feature: gene Location: 21368-21847 bp Feature: gene Location: 21958-22203 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), CotH (pfam08757), RVT-DGRs