myRT

myRT report for GCA_002452115.1_ASM245211v1

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Seq: DKEJ01000089.1 TPA_asm: Pseudomonas nitroreducens isolate UBA6825 UBA6825_contig_30, whole genome shotgun sequence (125955 bp)
Overview 1 RT 1: 4630-14636 bp Neighborhood of RT #1 [4630, 14638] zf-ribbon_3 RVT-GII Intron_maturas2 HNHc PBP2_BvgS_HisK_like PRK09776 PAS_8 PRK09776 PAC PRK10060 PRK05658 Feature: gene Location: 4630-4962 bp Feature: domain Description: zf-ribbon_3 Location: 4642-4711 bp Feature: domain Description: zf-ribbon_3 Location: 4642-471 1 bp Feature: gene Location: 5110-5889 bp Feature: gene Location: 6406-8169 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6586-7405 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6586-7405 bp Feature: domain Description: Intron_maturas2 Location: 7498-7834 bp Feature: domain Description: Intron_maturas2 Location: 7498-7834 bp Feature: domain Description: HNHc Note: nucleases Location: 7936-8095 bp Feature: domain Description: HNHc Note: nucleases Location: 7936-8095 bp Feature: gene Location: 8949-12683 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 9054-9711 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 9054-971 1 bp Feature: domain Description: PRK09776 Location: 9924-10254 bp Feature: domain Description: PRK09776 Location: 9924-1 0254 bp Feature: domain Description: PAS_8 Location: 10260-10395 bp Feature: domain Description: PAS_8 Location: 1 0260-1 0395 bp Feature: domain Description: PRK09776 Location: 10554-10764 bp Feature: domain Description: PRK09776 Location: 1 0554-1 0764 bp Feature: domain Description: PAC Location: 10863-10971 bp Feature: domain Description: PAC Location: 1 0863-1 0971 bp Feature: domain Description: PRK10060 Location: 10977-12630 bp Feature: domain Description: PRK1 0060 Location: 1 0977-1 2630 bp Feature: gene Location: 12788-14638 bp Feature: domain Description: PRK05658 Location: 12800-14636 bp Feature: domain Description: PRK05658 Location: 1 2800-1 4636 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05658 (RNA polymerase sigma factor RpoD; Validated), zf-ribbon_3 (pfam13248), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS_8 (pfam13188), PAC (smart00086), PRK10060 (cyclic di-GMP phosphodiesterase)