myRT

myRT report for GCA_002452325.1_ASM245232v1

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Seq: DKFG01000235.1 TPA_asm: Geobacter sp. UBA6802 UBA6802_contig_12417, whole genome shotgun sequence (46191 bp)
Overview 1 RT 1: 14681-17407 bp Neighborhood of RT #1 [14681, 17436] RVT-DGRs Avd_like Feature: gene Location: 14681-15277 bp Feature: gene Location: 15274-15546 bp Feature: gene Location: 15773-16780 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 15980-16568 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 5980-1 6568 bp Feature: gene Location: 16864-17025 bp Feature: gene Location: 17035-17436 bp Feature: domain Description: Avd_like Location: 17059-17407 bp Feature: domain Description: Avd_like Location: 1 7059-1 7407 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376)

Seq: DKFG01000040.1 TPA_asm: Geobacter sp. UBA6802 UBA6802_contig_15087, whole genome shotgun sequence (19798 bp)
Overview 1 RT 1: 4732-7896 bp Neighborhood of RT #1 [4732, 7907] FN3 DUF1566 Avd_like RVT-DGRs DUF1566 Feature: gene Location: 4732-5928 bp Feature: domain Description: FN3 Location: 5161-5428 bp Feature: domain Description: FN3 Location: 5161-542 8 bp Feature: domain Description: DUF1566 Location: 5551-5917 bp Feature: domain Description: DUF1566 Location: 5551-5917 bp Feature: gene Location: 5961-6353 bp Feature: domain Description: Avd_like Location: 5988-6297 bp Feature: domain Description: Avd_like Location: 5988-62 97 bp Feature: gene Location: 6620-7303 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6863-7019 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6863-7019 bp Feature: gene Location: 7326-7469 bp Feature: gene Location: 7566-7907 bp Feature: domain Description: DUF1566 Location: 7590-7896 bp Feature: domain Description: DUF1566 Location: 7590-7896 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FN3 (smart00060), DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs

Seq: DKFG01000262.1 TPA_asm: Geobacter sp. UBA6802 UBA6802_contig_19166, whole genome shotgun sequence (8530 bp)
Overview 1 RT 1: 2329-7441 bp Neighborhood of RT #1 [2329, 7461] NtrY DUF327 RVT-GII RplQ Feature: gene Location: 2329-4545 bp Feature: domain Description: NtrY Location: 2380-4540 bp Feature: domain Description: NtrY Location: 23 80-4540 bp Feature: gene Location: 4656-5108 bp Feature: domain Description: DUF327 Location: 4707-5100 bp Feature: domain Description: DUF3 27 Location: 4707-5100 bp Feature: gene Location: 5537-6568 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5876-6491 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5876-6491 bp Feature: gene Location: 6661-6954 bp Feature: gene Location: 7093-7461 bp Feature: domain Description: RplQ Location: 7096-7441 bp Feature: domain Description: RplQ Location: 7096-7441 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NtrY (COG5000), DUF327 (pfam03885), RVT-GII, RplQ (COG0203)

Seq: DKFG01000054.1 TPA_asm: Geobacter sp. UBA6802 UBA6802_contig_19167, whole genome shotgun sequence (18779 bp)
Overview 1 RT 1: 8484-12460 bp Neighborhood of RT #1 [8484, 12460] PilZ NlpD RVT-GII GIIM Feature: gene Location: 8484-9206 bp Feature: domain Description: PilZ Location: 8841-9156 bp Feature: domain Description: PilZ Location: 884 1-9156 bp Feature: gene Location: 9351-10166 bp Feature: domain Description: NlpD Location: 9552-10077 bp Feature: domain Description: NlpD Location: 9552-10077 bp Feature: gene Location: 10250-11653 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10589-11207 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10589-11207 bp Feature: domain Description: GIIM Note: maturase Location: 11255-11483 bp Feature: domain Description: GIIM Note: maturase Location: 11255-114 83 bp Feature: gene Location: 11804-12025 bp Feature: gene Location: 12164-12460 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PilZ (pfam07238), NlpD (COG0739)

Seq: DKFG01000265.1 TPA_asm: Geobacter sp. UBA6802 UBA6802_contig_28674, whole genome shotgun sequence (16174 bp)
Overview 1 RT 1: 11368-14253 bp Neighborhood of RT #1 [11368, 14420] COG5573 DUF1566 RVT-DGRs DUF1566 Avd_like Feature: gene Location: 11368-11778 bp Feature: domain Description: COG5573 Location: 11380-11776 bp Feature: domain Description: COG5 5 73 Location: 11380-11776 bp Feature: gene Location: 11934-12434 bp Feature: domain Description: DUF1566 Location: 12072-12423 bp Feature: domain Description: DUF15 66 Location: 12072-12423 bp Feature: gene Location: 12449-13678 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 12659-13358 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1265 9-1335 8 bp Feature: gene Location: 13684-13878 bp Feature: domain Description: DUF1566 Location: 13732-13861 bp Feature: domain Description: DUF15 66 Location: 13732-13861 bp Feature: gene Location: 13875-14420 bp Feature: domain Description: Avd_like Location: 13899-14253 bp Feature: domain Description: Avd_like Location: 13899-1425 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5573 (Predicted nucleic acid-binding protein, contains PIN domain ), DUF1566 (pfam07603), RVT-DGRs, Avd_like (cd16376)

Seq: DKFG01000083.1 TPA_asm: Geobacter sp. UBA6802 UBA6802_contig_42983, whole genome shotgun sequence (8558 bp)
Overview 1 RT 1: 3056-8553 bp Neighborhood of RT #1 [3056, 8555] MoxR RVT-GII GIIM Tar Feature: gene Location: 3056-3874 bp Feature: domain Description: MoxR Location: 3209-3707 bp Feature: domain Description: MoxR Location: 3209-3707 bp Feature: gene Location: 3880-5784 bp Feature: gene Location: 6553-7887 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6895-7543 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6 895-7543 bp Feature: domain Description: GIIM Note: maturase Location: 7621-7822 bp Feature: domain Description: GIIM Note: maturase Location: 76 21-7822 bp Feature: gene Location: 8112-8555 bp Feature: domain Description: Tar Location: 8115-8553 bp Feature: domain Description: Tar Location: 8115-8553 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MoxR (COG0714), RVT-GII, GIIM (pfam08388), Tar (COG0840)