myRT

myRT report for GCA_002452365.1_ASM245236v1

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Seq: DKFK01000116.1 TPA_asm: Smithella sp. UBA6798 UBA6798_contig_13403, whole genome shotgun sequence (6246 bp)
Overview 1 RT 1: 2154-6244 bp Neighborhood of RT #1 [2154, 6244] TIGR00159 YbbR Ferritin_like_AB RVT-GII PRK09183 Feature: gene Location: 2154-3629 bp Feature: domain Description: TIGR00159 Location: 2319-2934 bp Feature: domain Description: TIGR001 59 Location: 231 9-2934 bp Feature: domain Description: YbbR Location: 3087-3603 bp Feature: domain Description: YbbR Location: 3087-3603 bp Feature: gene Location: 3773-4252 bp Feature: domain Description: Ferritin_like_AB Location: 3797-4232 bp Feature: domain Description: Ferritin_like_AB Location: 3797-4232 bp Feature: gene Location: 4556-5017 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4814-4952 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 481 4-4952 bp Feature: gene Location: 5052-5831 bp Feature: domain Description: PRK09183 Location: 5061-5769 bp Feature: domain Description: PRK091 83 Location: 5061 -5769 bp Feature: gene Location: 5819-6244 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR00159 (TIGR00159 family protein), YbbR (pfam07949), Ferritin_like_AB (cd01045), RVT-GII, PRK09183 (transposase/IS protein; Provisional)

Seq: DKFK01000083.1 TPA_asm: Smithella sp. UBA6798 UBA6798_contig_19709, whole genome shotgun sequence (16107 bp)
Overview 1 RT 1: 11217-15849 bp Neighborhood of RT #1 [11217, 15849] RVT-CRISPR Cas1_I-II-III Feature: gene Location: 11217-12101 bp Feature: gene Location: 12103-12612 bp Feature: gene Location: 12655-15291 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 13636-14245 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 13636-142 45 bp Feature: domain Description: Cas1_I-II-III Location: 14326-15256 bp Feature: domain Description: Cas1_I-II-III Location: 1432 6-152 56 bp Feature: gene Location: 15565-15849 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, Cas1_I-II-III (cl00656)

Seq: DKFK01000084.1 TPA_asm: Smithella sp. UBA6798 UBA6798_contig_3623, whole genome shotgun sequence (11553 bp)
Overview 1 RT 1: 78-3291 bp Neighborhood of RT #1 [78, 3291] RVT-GII GIIM RVT-GII Feature: gene Location: 78-1499 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 456-1113 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 456-1113 bp Feature: domain Description: GIIM Note: maturase Location: 1194-1416 bp Feature: domain Description: GIIM Note: maturase Location: 1194-1416 bp Feature: gene Location: 1688-2698 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2039-2513 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 203 9-2513 bp Feature: gene Location: 2456-3088 bp Feature: gene Location: 3121-3291 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)