myRT

myRT report for GCA_002453135.1_ASM245313v1

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Seq: DKGF01000179.1 TPA_asm: Myxococcales bacterium UBA6777 UBA6777_contig_3118, whole genome shotgun sequence (193118 bp)
Overview 1 RT 1: 64533-72873 bp Neighborhood of RT #1 [64533, 72881] OmpR ligand_gated_channel ligand_gated_channel RVT-Retrons RVT-Retrons OEP OEP PRK05437 Feature: gene Location: 64533-65258 bp Feature: domain Description: OmpR Location: 64554-65238 bp Feature: domain Description: OmpR Location: 64554-65238 bp Feature: gene Location: 65264-67555 bp Feature: domain Description: ligand_gated_channel Location: 65750-66305 bp Feature: domain Description: ligand_gated_channel Location: 65750-66305 bp Feature: domain Description: ligand_gated_channel Location: 66767-67505 bp Feature: domain Description: ligand_gated_channel Location: 66767-67505 bp Feature: gene Location: 67762-69915 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 67972-68593 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 67972-68593 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 69016-69613 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6901 6-6961 3 bp Feature: gene Location: 69963-71594 bp Feature: domain Description: OEP Location: 70143-70887 bp Feature: domain Description: OEP Location: 701 43-70887 bp Feature: domain Description: OEP Location: 70962-71511 bp Feature: domain Description: OEP Location: 70962-71 51 1 bp Feature: gene Location: 71775-72881 bp Feature: domain Description: PRK05437 Location: 71859-72873 bp Feature: domain Description: PRK05437 Location: 71 859-72873 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OmpR (COG0745), ligand_gated_channel (cd01347), RVT-Retrons, OEP (pfam02321), PRK05437 (isopentenyl pyrophosphate isomerase; Provisional)

Seq: DKGF01000010.1 TPA_asm: Myxococcales bacterium UBA6777 UBA6777_contig_4974, whole genome shotgun sequence (46896 bp)
Overview 1 RT 1: 36910-46893 bp Neighborhood of RT #1 [36910, 46893] DUF3421 DUF3421 DUF3421 TECPR TECPR TECPR HEAT_2 HEAT_2 Aldo_ket_red RVT-Retrons YfmG Feature: gene Location: 36910-40875 bp Feature: domain Description: DUF3421 Location: 37054-37387 bp Feature: domain Description: DUF342 1 Location: 37054-37387 bp Feature: domain Description: DUF3421 Location: 39115-39445 bp Feature: domain Description: DUF342 1 Location: 39115-39445 bp Feature: domain Description: DUF3421 Location: 39853-40165 bp Feature: domain Description: DUF342 1 Location: 39853-40165 bp Feature: domain Description: TECPR Location: 40441-40534 bp Feature: domain Description: TECPR Location: 40441-40534 bp Feature: domain Description: TECPR Location: 40648-40744 bp Feature: domain Description: TECPR Location: 40648-40744 bp Feature: domain Description: TECPR Location: 40753-40852 bp Feature: domain Description: TECPR Location: 40753-40852 bp Feature: gene Location: 41581-44010 bp Feature: domain Description: HEAT_2 Location: 41677-41923 bp Feature: domain Description: HEAT_2 Location: 41677-4192 3 bp Feature: domain Description: HEAT_2 Location: 42205-42418 bp Feature: domain Description: HEAT_2 Location: 42 2 05-42 418 bp Feature: domain Description: Aldo_ket_red Location: 43219-43951 bp Feature: domain Description: Aldo_ket_red Location: 432 19-43951 bp Feature: gene Location: 44155-45720 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 44824-45448 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4482 4-45448 bp Feature: gene Location: 45713-46663 bp Feature: domain Description: YfmG Location: 45920-46430 bp Feature: domain Description: YfmG Location: 4592 0-46430 bp Feature: gene Location: 46666-46893 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3421 (pfam11901), TECPR (smart00706), HEAT_2 (pfam13646), Aldo_ket_red (pfam00248), RVT-Retrons, YfmG (COG1262)

Seq: DKGF01000162.1 TPA_asm: Myxococcales bacterium UBA6777 UBA6777_contig_530, whole genome shotgun sequence (58767 bp)
Overview 1 RT 1: 12326-24387 bp Neighborhood of RT #1 [12326, 24449] WD40 WD40 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 WGR_MMR_like RVT-Retrons SpoIID YdiL Feature: gene Location: 12326-18793 bp Feature: domain Description: WD40 Location: 12344-12728 bp Feature: domain Description: WD40 Location: 123 44-12728 bp Feature: domain Description: WD40 Location: 12806-13301 bp Feature: domain Description: WD40 Location: 12806-13 3 01 bp Feature: domain Description: HEAT_2 Location: 13433-13685 bp Feature: domain Description: HEAT_2 Location: 13 43 3 -13 685 bp Feature: domain Description: HEAT_2 Location: 14168-14411 bp Feature: domain Description: HEAT_2 Location: 14168-14411 bp Feature: domain Description: HEAT_2 Location: 14855-14981 bp Feature: domain Description: HEAT_2 Location: 14855-14981 bp Feature: domain Description: HEAT_2 Location: 15314-15476 bp Feature: domain Description: HEAT_2 Location: 153 14-15476 bp Feature: domain Description: HEAT Location: 16169-16253 bp Feature: domain Description: HEAT Location: 16169-16253 bp Feature: domain Description: HEAT_2 Location: 16307-16505 bp Feature: domain Description: HEAT_2 Location: 163 07-16505 bp Feature: domain Description: HEAT_2 Location: 16553-16769 bp Feature: domain Description: HEAT_2 Location: 16553 -16769 bp Feature: domain Description: HEAT_2 Location: 16835-17096 bp Feature: domain Description: HEAT_2 Location: 1683 5-17096 bp Feature: domain Description: HEAT_2 Location: 17135-17399 bp Feature: domain Description: HEAT_2 Location: 1713 5-173 99 bp Feature: domain Description: HEAT_2 Location: 17456-17699 bp Feature: domain Description: HEAT_2 Location: 17456-17699 bp Feature: domain Description: HEAT_2 Location: 17963-18125 bp Feature: domain Description: HEAT_2 Location: 17963 -18125 bp Feature: domain Description: HEAT_2 Location: 18239-18422 bp Feature: domain Description: HEAT_2 Location: 1823 9-18422 bp Feature: gene Location: 18809-20656 bp Feature: domain Description: WGR_MMR_like Location: 20495-20639 bp Feature: domain Description: WGR_MMR_like Location: 20495-2063 9 bp Feature: gene Location: 20692-22032 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 21166-21784 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 21166-21784 bp Feature: gene Location: 22153-23808 bp Feature: domain Description: SpoIID Location: 22777-23794 bp Feature: domain Description: SpoIID Location: 22777-23 794 bp Feature: gene Location: 23811-24449 bp Feature: domain Description: YdiL Location: 23853-24387 bp Feature: domain Description: YdiL Location: 23 853 -243 87 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT WD40 (smart00320), HEAT_2 (pfam13646), HEAT (sd00044), WGR_MMR_like (cd07996), RVT-Retrons, SpoIID (pfam08486), YdiL (COG1266)

Seq: DKGF01000074.1 TPA_asm: Myxococcales bacterium UBA6777 UBA6777_contig_8196, whole genome shotgun sequence (99590 bp)
Overview 1 RT 1: 9651-13688 bp Neighborhood of RT #1 [9651, 13688] Serpin RVT-GII Feature: gene Location: 9651-9845 bp Feature: gene Location: 10009-11256 bp Feature: domain Description: Serpin Location: 10150-11248 bp Feature: domain Description: Serpin Location: 10150-1124 8 bp Feature: gene Location: 11971-12945 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12295-12910 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12295-12910 bp Feature: gene Location: 13208-13348 bp Feature: gene Location: 13353-13688 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Serpin (pfam00079), RVT-GII

Seq: DKGF01000122.1 TPA_asm: Myxococcales bacterium UBA6777 UBA6777_contig_8385, whole genome shotgun sequence (83782 bp)
Overview 1 RT 1: 60918-68085 bp Neighborhood of RT #1 [60918, 72545] PleD PRK10060 BaeS RVT-Retrons SWIM HEAT_2 Feature: gene Location: 60918-63023 bp Feature: domain Description: PleD Location: 60945-61347 bp Feature: domain Description: PleD Location: 60945 -61347 bp Feature: domain Description: PRK10060 Location: 61632-62994 bp Feature: domain Description: PRK10060 Location: 61632-62994 bp Feature: gene Location: 63128-64654 bp Feature: domain Description: BaeS Location: 63875-64592 bp Feature: domain Description: BaeS Location: 63875 -645 92 bp Feature: gene Location: 64858-66267 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 65419-66028 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 65 419-66028 bp Feature: gene Location: 66278-67912 bp Feature: domain Description: SWIM Location: 67805-67886 bp Feature: domain Description: SWIM Location: 67805 -67886 bp Feature: gene Location: 67902-72545 bp Feature: domain Description: HEAT_2 Location: 67932-68085 bp Feature: domain Description: HEAT_2 Location: 67932-68085 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PleD (COG3706), PRK10060 (cyclic di-GMP phosphodiesterase), BaeS (COG0642), RVT-Retrons, SWIM (pfam04434), HEAT_2 (pfam13646)