myRT

myRT report for GCA_002454255.1_ASM245425v1

Download annotations/find similar RTs

Seq: DKIM01000083.1 TPA_asm: Pseudomonas sp. UBA6718 UBA6718_contig_1185, whole genome shotgun sequence (22400 bp)
Overview 1 RT 1: 19083-21711 bp Neighborhood of RT #1 [19083, 22082] DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII Feature: gene Location: 19083-19328 bp Feature: gene Location: 19865-20236 bp Feature: domain Description: DDE_Tnp_IS66 Location: 19874-20078 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 9874-20078 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 20099-20210 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 20099-2021 0 bp Feature: gene Location: 20337-22082 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21021-21711 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 021 -21 71 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT-GII

Seq: DKIM01000038.1 TPA_asm: Pseudomonas sp. UBA6718 UBA6718_contig_1466, whole genome shotgun sequence (25894 bp)
Overview 1 RT 1: 17126-25620 bp Neighborhood of RT #1 [17126, 25622] OmpR PRK07207 RVT-GII GIIM HNHc PRK07209 Feature: gene Location: 17126-17845 bp Feature: domain Description: OmpR Location: 17147-17822 bp Feature: domain Description: OmpR Location: 17147-1782 2 bp Feature: gene Location: 18513-21395 bp Feature: domain Description: PRK07207 Location: 18528-21390 bp Feature: domain Description: PRK072 07 Location: 1852 8-2 1390 bp Feature: gene Location: 22512-23882 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22515-23121 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 515-2 312 1 bp Feature: domain Description: GIIM Note: maturase Location: 23196-23427 bp Feature: domain Description: GIIM Note: maturase Location: 2 3196-2 342 7 bp Feature: domain Description: HNHc Note: nucleases Location: 23667-23817 bp Feature: domain Description: HNHc Note: nucleases Location: 2 3667-2 3817 bp Feature: gene Location: 24345-25622 bp Feature: domain Description: PRK07209 Location: 24381-25620 bp Feature: domain Description: PRK072 09 Location: 2 4381-2 562 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OmpR (COG0745), PRK07207 (ribonucleoside-diphosphate reductase subunit alpha), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK07209 (ribonucleotide-diphosphate reductase subunit beta; Validated)