myRT

myRT report for GCA_002455435.1_ASM245543v1

Download annotations/find similar RTs

Seq: DKKU01000039.1 TPA_asm: Candidatus Accumulibacter phosphatis isolate UBA6658 UBA6658_contig_15, whole genome shotgun sequence (24300 bp)
Overview 1 RT 1: 16657-20912 bp Neighborhood of RT #1 [16657, 20956] PEP-CTERM RVT-GII GIIM TDT_like_3 Feature: gene Location: 16657-16821 bp Feature: gene Location: 17749-18432 bp Feature: domain Description: PEP-CTERM Location: 18358-18418 bp Feature: domain Description: PEP-CTERM Location: 1 8358-1 841 8 bp Feature: gene Location: 18747-19391 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18759-18948 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 8759-1 8948 bp Feature: domain Description: GIIM Note: maturase Location: 18996-19221 bp Feature: domain Description: GIIM Note: maturase Location: 1 8996-1 9221 bp Feature: gene Location: 19542-19793 bp Feature: gene Location: 19892-20956 bp Feature: domain Description: TDT_like_3 Location: 19955-20912 bp Feature: domain Description: TDT_like_3 Location: 1 9955-2091 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PEP-CTERM, RVT-GII, GIIM (pfam08388), TDT_like_3 (cd09321)

Seq: DKKU01000020.1 TPA_asm: Candidatus Accumulibacter phosphatis isolate UBA6658 UBA6658_contig_155, whole genome shotgun sequence (52537 bp)
Overview 1 RT 1: 27389-33381 bp Neighborhood of RT #1 [27389, 33381] PaaI_thioesterase COG5635 pfam03781 RVT-DGRs Avd_like Feature: gene Location: 27389-27865 bp Feature: domain Description: PaaI_thioesterase Location: 27491-27827 bp Feature: domain Description: PaaI_thioesterase Location: 2 7491-2 782 7 bp Feature: gene Location: 28115-31222 bp Feature: domain Description: COG5635 Location: 28811-30140 bp Feature: domain Description: COG5635 Location: 2 8811-30140 bp Feature: domain Description: pfam03781 Location: 30575-31199 bp Feature: domain Description: pfam03781 Location: 30575-31199 bp Feature: gene Location: 31547-32608 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31745-32393 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31745-32 393 bp Feature: gene Location: 32773-33177 bp Feature: domain Description: Avd_like Location: 32800-33112 bp Feature: domain Description: Avd_like Location: 32 800-33112 bp Feature: gene Location: 33223-33381 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PaaI_thioesterase (cd03443), COG5635 (Predicted NTPase, NACHT family domain ), pfam03781 (FGE-sulfatase;Sulfatase-modifying factor enzyme 1), RVT-DGRs, Avd_like (cd16376)