myRT

myRT report for GCA_002456195.1_ASM245619v1

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Seq: NKDH01000031.1 Escherichia coli strain MOD1-EC892 MOD1-EC892_31_length_45511_cov_36.5872, whole genome shotgun sequence (45511 bp)
Overview 1 RT 1: 24194-27937 bp Neighborhood of RT #1 [24194, 27948] SmpB RVT-UG11 PRK09678 D Feature: gene Location: 24194-24676 bp Feature: domain Description: SmpB Location: 24224-24671 bp Feature: domain Description: SmpB Location: 24224-24671 bp Feature: gene Location: 24810-24977 bp Feature: gene Location: 25362-26135 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 25497-25950 bp Feature: RT Description: RVT-UG1 1 Note: UG1 1 RT Location: 25497-25950 bp Feature: gene Location: 26539-26757 bp Feature: domain Description: PRK09678 Location: 26542-26740 bp Feature: domain Description: PRK09678 Location: 26542-26740 bp Feature: gene Location: 26848-27948 bp Feature: domain Description: D Location: 26854-27937 bp Feature: domain Description: D Location: 26854-27937 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SmpB (pfam01668), RVT-UG11, PRK09678 (DNA-binding transcriptional regulator; Provisional), D (PHA02561)

Seq: NKDH01000047.1 Escherichia coli strain MOD1-EC892 MOD1-EC892_47_length_15711_cov_54.9872, whole genome shotgun sequence (15711 bp)
Overview 1 RT 1: 12165-15193 bp Neighborhood of RT #1 [12165, 15193] AdoMet_MTases RVT_N RVT-GII GIIM HNHc Feature: gene Location: 12165-12728 bp Feature: domain Description: AdoMet_MTases Location: 12327-12624 bp Feature: domain Description: AdoMet_MTases Location: 12 32 7-12 62 4 bp Feature: gene Location: 12762-12893 bp Feature: gene Location: 13064-14731 bp Feature: domain Description: RVT_N Location: 13112-13349 bp Feature: domain Description: RVT_N Location: 13112 -13349 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13400-14042 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13400-14042 bp Feature: domain Description: GIIM Note: maturase Location: 14093-14327 bp Feature: domain Description: GIIM Note: maturase Location: 14093-1432 7 bp Feature: domain Description: HNHc Note: nucleases Location: 14537-14696 bp Feature: domain Description: HNHc Note: nucleases Location: 14537-14696 bp Feature: gene Location: 14747-14884 bp Feature: gene Location: 15011-15193 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AdoMet_MTases (cl17173), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)