myRT

myRT report for GCA_002456345.1_ASM245634v1

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Seq: NKDR01000043.1 Escherichia coli strain MOD1-EC701 MOD1-EC701_43_length_9373_cov_16.0558, whole genome shotgun sequence (9373 bp)
Overview 1 RT 1: 5428-8536 bp Neighborhood of RT #1 [5428, 8601] PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 5428-5745 bp Feature: gene Location: 5711-6157 bp Feature: domain Description: PHA02517 Location: 5714-6155 bp Feature: domain Description: PHA0251 7 Location: 571 4-61 55 bp Feature: gene Location: 6274-7797 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6547-7279 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6547-7279 bp Feature: domain Description: GIIM Note: maturase Location: 7354-7552 bp Feature: domain Description: GIIM Note: maturase Location: 7354-7552 bp Feature: gene Location: 7751-8176 bp Feature: gene Location: 8389-8601 bp Feature: domain Description: PHA02517 Location: 8392-8536 bp Feature: domain Description: PHA0251 7 Location: 8392-8536 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: NKDR01000009.1 Escherichia coli strain MOD1-EC701 MOD1-EC701_9_length_181767_cov_24.9595, whole genome shotgun sequence (181767 bp)
Overview 1 RT 1: 130919-134801 bp Neighborhood of RT #1 [130919, 134806] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 130919-131635 bp Feature: domain Description: rph Location: 130922-131630 bp Feature: domain Description: rph Location: 13092 2 -131630 bp Feature: gene Location: 131686-132342 bp Feature: domain Description: pyrE Location: 131704-132337 bp Feature: domain Description: pyrE Location: 131704-132 337 bp Feature: gene Location: 132640-133599 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 132775-133324 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 132 775-13332 4 bp Feature: gene Location: 133645-134241 bp Feature: domain Description: slmA Location: 133651-134227 bp Feature: domain Description: slmA Location: 133651-1342 2 7 bp Feature: gene Location: 134348-134806 bp Feature: domain Description: dut Location: 134354-134801 bp Feature: domain Description: dut Location: 134354-134801 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)