myRT

myRT report for GCA_002456855.1_ASM245685v1

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Seq: NKEA01000129.1 Escherichia coli strain MOD1-EC676 MOD1-EC676_129_length_2762_cov_72.7892, whole genome shotgun sequence (2760 bp)
Overview 1 RT 1: 239-2733 bp Neighborhood of RT #1 [239, 2759] CbeA_antitoxin RVT-GII GIIM CbeA_antitoxin DUF987 Feature: gene Location: 239-433 bp Feature: domain Description: CbeA_antitoxin Location: 359-416 bp Feature: domain Description: CbeA_antitoxin Location: 359-41 6 bp Feature: gene Location: 474-824 bp Feature: gene Location: 851-2092 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1058-1715 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 058-1 71 5 bp Feature: domain Description: GIIM Note: maturase Location: 1796-2018 bp Feature: domain Description: GIIM Note: maturase Location: 1 796-201 8 bp Feature: gene Location: 2129-2533 bp Feature: domain Description: CbeA_antitoxin Location: 2240-2486 bp Feature: domain Description: CbeA_antitoxin Location: 2240-2486 bp Feature: gene Location: 2547-2759 bp Feature: domain Description: DUF987 Location: 2550-2733 bp Feature: domain Description: DUF987 Location: 2550-2733 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CbeA_antitoxin (pfam06154), DUF987 (pfam06174), RVT-GII, GIIM (pfam08388)

Seq: NKEA01000132.1 Escherichia coli strain MOD1-EC676 MOD1-EC676_132_length_2642_cov_55.8803, whole genome shotgun sequence (2640 bp)
Overview 1 RT 1: 187-2449 bp Neighborhood of RT #1 [187, 2514] RVT-GII GIIM PHA02517 Feature: gene Location: 187-1710 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 460-1192 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 460-1192 bp Feature: domain Description: GIIM Note: maturase Location: 1267-1465 bp Feature: domain Description: GIIM Note: maturase Location: 12 67-1465 bp Feature: gene Location: 2302-2514 bp Feature: domain Description: PHA02517 Location: 2305-2449 bp Feature: domain Description: PHA02 517 Location: 2 305-2 449 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)

Seq: NKEA01000025.1 Escherichia coli strain MOD1-EC676 MOD1-EC676_25_length_66232_cov_55.2023, whole genome shotgun sequence (66232 bp)
Overview 1 RT 1: 9766-13648 bp Neighborhood of RT #1 [9766, 13653] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 9766-10224 bp Feature: domain Description: dut Location: 9772-10219 bp Feature: domain Description: dut Location: 9772-10219 bp Feature: gene Location: 10331-10927 bp Feature: domain Description: slmA Location: 10337-10913 bp Feature: domain Description: slmA Location: 103 3 7-10913 bp Feature: gene Location: 10973-11932 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 11108-11657 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 11108-11657 bp Feature: gene Location: 12230-12886 bp Feature: domain Description: pyrE Location: 12248-12881 bp Feature: domain Description: pyrE Location: 12248-12881 bp Feature: gene Location: 12937-13653 bp Feature: domain Description: rph Location: 12940-13648 bp Feature: domain Description: rph Location: 12940-13 648 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173), dut (TIGR00576)

Seq: NKEA01000003.1 Escherichia coli strain MOD1-EC676 MOD1-EC676_3_length_197257_cov_52.1726, whole genome shotgun sequence (197257 bp)
Overview 1 RT 1: 11072-16938 bp Neighborhood of RT #1 [11072, 16943] RVT-Retrons Q P Feature: gene Location: 11072-11914 bp Feature: gene Location: 12337-13185 bp Feature: gene Location: 13187-14116 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 13286-13871 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 13286-13871 bp Feature: gene Location: 14152-15177 bp Feature: domain Description: Q Location: 14155-15169 bp Feature: domain Description: Q Location: 14 155-15169 bp Feature: gene Location: 15177-16943 bp Feature: domain Description: P Location: 15204-16938 bp Feature: domain Description: P Location: 15204 -16938 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, Q (PHA02536), P (PHA02535)