myRT

myRT report for GCA_002458215.1_ASM245821v1

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Seq: NJYM01000030.1 Escherichia coli strain MOD1-EC1841 MOD1-EC1841_30_length_54414_cov_27.4587, whole genome shotgun sequence (54414 bp)
Overview 1 RT 1: 49289-53171 bp Neighborhood of RT #1 [49289, 53176] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 49289-49747 bp Feature: domain Description: dut Location: 49295-49742 bp Feature: domain Description: dut Location: 49295-49742 bp Feature: gene Location: 49854-50450 bp Feature: domain Description: slmA Location: 49860-50436 bp Feature: domain Description: slmA Location: 49860-50436 bp Feature: gene Location: 50496-51455 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 50631-51180 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 50631 -51 1 80 bp Feature: gene Location: 51753-52409 bp Feature: domain Description: pyrE Location: 51771-52404 bp Feature: domain Description: pyrE Location: 51 771 -52404 bp Feature: gene Location: 52460-53176 bp Feature: domain Description: rph Location: 52463-53171 bp Feature: domain Description: rph Location: 52463-531 71 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: NJYM01000004.1 Escherichia coli strain MOD1-EC1841 MOD1-EC1841_4_length_186550_cov_26.7181, whole genome shotgun sequence (186550 bp)
Overview 1 RT 1: 5-4635 bp Neighborhood of RT #1 [5, 4637] Caudo_TAP RVT-UG17 SLATT_5 prfC Feature: gene Location: 5-355 bp Feature: domain Description: Caudo_TAP Location: 29-344 bp Feature: domain Description: Caudo_TAP Location: 2 9-344 bp Feature: gene Location: 468-1838 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 696-1302 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 696-1302 bp Feature: gene Location: 1816-2520 bp Feature: domain Description: SLATT_5 Location: 1978-2488 bp Feature: domain Description: SLATT_5 Location: 1978-2 488 bp Feature: gene Location: 3051-4637 bp Feature: domain Description: prfC Location: 3069-4635 bp Feature: domain Description: prfC Location: 3069-4635 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Caudo_TAP (pfam02413), RVT-UG17, SLATT_5 (pfam18160), prfC (TIGR00503)

Seq: NJYM01000098.1 Escherichia coli strain MOD1-EC1841 MOD1-EC1841_98_length_4097_cov_31.5841, whole genome shotgun sequence (4097 bp)
Overview 1 RT 1: 181-3842 bp Neighborhood of RT #1 [181, 3847] RVT-GII GIIM AidA AidA Feature: gene Location: 181-1704 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 454-1186 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 454-1186 bp Feature: domain Description: GIIM Note: maturase Location: 1261-1459 bp Feature: domain Description: GIIM Note: maturase Location: 1261-1459 bp Feature: gene Location: 2288-3847 bp Feature: domain Description: AidA Location: 2297-3401 bp Feature: domain Description: AidA Location: 2297-3 401 bp Feature: domain Description: AidA Location: 3440-3842 bp Feature: domain Description: AidA Location: 3 440-3 842 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), AidA (COG3468)