myRT

myRT report for GCA_002459005.1_ASM245900v1

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Seq: NKOD01000003.1 Escherichia coli strain MOD1-EC1966 MOD1-EC1966_3_length_272671_cov_24.2206, whole genome shotgun sequence (272671 bp)
Overview 1 RT 1: 228705-232907 bp Neighborhood of RT #1 [228705, 232907] TIGR02646 COG3950 RVT-Retrons DinI Feature: gene Location: 228705-229265 bp Feature: domain Description: TIGR02646 Location: 228708-229056 bp Feature: domain Description: TIGR02646 Location: 228708-229056 bp Feature: gene Location: 229385-231019 bp Feature: domain Description: COG3950 Location: 229523-230981 bp Feature: domain Description: COG3950 Location: 229523-230981 bp Feature: gene Location: 231019-231954 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 231121-231715 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 231 1 21 -231 71 5 bp Feature: gene Location: 232433-232666 bp Feature: domain Description: DinI Location: 232475-232661 bp Feature: domain Description: DinI Location: 232475-232661 bp Feature: gene Location: 232677-232907 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR02646 (TIGR02646 family protein), COG3950 (Predicted ATP-binding protein involved in virulence ), RVT-Retrons, DinI (pfam06183)

Seq: NKOD01000092.1 Escherichia coli strain MOD1-EC1966 MOD1-EC1966_92_length_2404_cov_62.2368, whole genome shotgun sequence (2404 bp)
Overview 1 RT 1: 148-2265 bp Neighborhood of RT #1 [148, 2321] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 148-348 bp Feature: gene Location: 462-596 bp Feature: gene Location: 621-2321 bp Feature: RT Description: RVT_N Location: 675-918 bp Feature: RT Description: RVT_N Location: 675-918 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 963-1599 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 963-1599 bp Feature: domain Description: GIIM Note: maturase Location: 1650-1884 bp Feature: domain Description: GIIM Note: maturase Location: 1650-1884 bp Feature: domain Description: HNHc Note: nucleases Location: 2115-2265 bp Feature: domain Description: HNHc Note: nucleases Location: 2 115-2 2 65 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)