myRT

myRT report for GCA_002459445.1_ASM245944v1

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Seq: NJYW01000122.1 Escherichia coli strain MOD1-EC1744 MOD1-EC1744_122_length_4225_cov_1206.27, whole genome shotgun sequence (4225 bp)
Overview 1 RT 1: 1662-3807 bp Neighborhood of RT #1 [1662, 3807] CspC RVT-Retrons Feature: gene Location: 1662-1823 bp Feature: gene Location: 2011-2214 bp Feature: domain Description: CspC Location: 2014-2209 bp Feature: domain Description: CspC Location: 201 4-2209 bp Feature: gene Location: 2219-3358 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2363-2918 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2363-291 8 bp Feature: gene Location: 3380-3562 bp Feature: gene Location: 3652-3807 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CspC (COG1278), RVT-Retrons

Seq: NJYW01000145.1 Escherichia coli strain MOD1-EC1744 MOD1-EC1744_145_length_2799_cov_78.7652, whole genome shotgun sequence (2799 bp)
Overview 1 RT 1: 2-2793 bp Neighborhood of RT #1 [2, 2798] RVT_N RVT-GII YkfC HNHc DUF1281 Feature: gene Location: 2-205 bp Feature: gene Location: 686-826 bp Feature: gene Location: 848-2572 bp Feature: domain Description: RVT_N Location: 905-1142 bp Feature: domain Description: RVT_N Location: 905-1142 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1193-1841 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1193-1841 bp Feature: domain Description: YkfC Location: 1973-2129 bp Feature: domain Description: YkfC Location: 1973-2 12 9 bp Feature: domain Description: HNHc Note: nucleases Location: 2357-2516 bp Feature: domain Description: HNHc Note: nucleases Location: 2 357-2 516 bp Feature: gene Location: 2649-2798 bp Feature: domain Description: DUF1281 Location: 2718-2793 bp Feature: domain Description: DUF12 81 Location: 2 718-2 793 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), DUF1281 (pfam06924)

Seq: NJYW01000208.1 Escherichia coli strain MOD1-EC1744 MOD1-EC1744_208_length_1297_cov_24.7328, whole genome shotgun sequence (1297 bp)
Overview 1 RT 1: 1-1163 bp Neighborhood of RT #1 [1, 1163] RVT-UG4 Feature: gene Location: 1-522 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 76-442 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 76-442 bp Feature: gene Location: 657-1163 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4

Seq: NJYW01000090.1 Escherichia coli strain MOD1-EC1744 MOD1-EC1744_90_length_9866_cov_26.8766, whole genome shotgun sequence (9866 bp)
Overview 1 RT 1: 84-2988 bp Neighborhood of RT #1 [84, 2996] RVT-UG4 PRK15211 Feature: gene Location: 84-935 bp Feature: gene Location: 964-1557 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1147-1285 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 114 7-1285 bp Feature: gene Location: 1713-2294 bp Feature: gene Location: 2301-2996 bp Feature: domain Description: PRK15211 Location: 2307-2988 bp Feature: domain Description: PRK15211 Location: 2307-2988 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4, PRK15211 (fimbrial chaperone)