myRT

myRT report for GCA_002459555.1_ASM245955v1

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Seq: NKOJ01000153.1 Escherichia coli strain MOD1-EC1706 MOD1-EC1706_153_length_3827_cov_22.3689, whole genome shotgun sequence (3827 bp)
Overview 1 RT 1: 2-1480 bp Neighborhood of RT #1 [2, 1480] RVT-GII Feature: gene Location: 2-148 bp Feature: gene Location: 170-976 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 374-965 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 374-965 bp Feature: gene Location: 964-1287 bp Feature: gene Location: 1340-1480 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: NKOJ01000169.1 Escherichia coli strain MOD1-EC1706 MOD1-EC1706_169_length_2272_cov_70.7026, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 93-2269 bp Neighborhood of RT #1 [93, 2269] RVT-GII GIIM Feature: gene Location: 93-1616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: gene Location: 1910-2269 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: NKOJ01000042.1 Escherichia coli strain MOD1-EC1706 MOD1-EC1706_42_length_41864_cov_22.4475, whole genome shotgun sequence (41864 bp)
Overview 1 RT 1: 22867-26779 bp Neighborhood of RT #1 [22867, 26784] RVT-GII RVT-GII GIIM LacI PBP1_GntR Feature: gene Location: 22867-23220 bp Feature: gene Location: 23602-23799 bp Feature: gene Location: 23968-24402 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24160-24376 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24160-243 76 bp Feature: gene Location: 24375-25226 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24378-24786 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 243 78-24786 bp Feature: domain Description: GIIM Note: maturase Location: 24834-25056 bp Feature: domain Description: GIIM Note: maturase Location: 2483 4-25056 bp Feature: gene Location: 25404-25622 bp Feature: gene Location: 25753-26784 bp Feature: domain Description: LacI Location: 25795-25930 bp Feature: domain Description: LacI Location: 25795-2593 0 bp Feature: domain Description: PBP1_GntR Location: 25969-26779 bp Feature: domain Description: PBP1_GntR Location: 25969-26779 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), LacI (pfam00356), PBP1_GntR (cd01575)

Seq: NKOJ01000073.1 Escherichia coli strain MOD1-EC1706 MOD1-EC1706_73_length_22725_cov_20.6618, whole genome shotgun sequence (22725 bp)
Overview 1 RT 1: 13562-18899 bp Neighborhood of RT #1 [13562, 18907] PFLE_PFLC RVT-GII RVT-GII GIIM YesM Feature: gene Location: 13562-14479 bp Feature: domain Description: PFLE_PFLC Location: 13598-14453 bp Feature: domain Description: PFLE_PFLC Location: 13598-14 4 53 bp Feature: gene Location: 14616-15521 bp Feature: gene Location: 16007-16546 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16337-16415 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16337-164 15 bp Feature: gene Location: 16574-17095 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16580-16862 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16580-16862 bp Feature: domain Description: GIIM Note: maturase Location: 16910-17090 bp Feature: domain Description: GIIM Note: maturase Location: 16910-17090 bp Feature: gene Location: 17417-17605 bp Feature: gene Location: 17645-18907 bp Feature: domain Description: YesM Location: 18158-18899 bp Feature: domain Description: YesM Location: 18158-18899 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PFLE_PFLC (TIGR02494), RVT-GII, GIIM (pfam08388), YesM (COG2972)

Seq: NKOJ01000081.1 Escherichia coli strain MOD1-EC1706 MOD1-EC1706_81_length_19735_cov_19.5161, whole genome shotgun sequence (19735 bp)
Overview 1 RT 1: 336-3713 bp Neighborhood of RT #1 [336, 3718] PRK09413 RVT-GII RVT-GII GIIM PinE Feature: gene Location: 336-533 bp Feature: domain Description: PRK09413 Location: 339-501 bp Feature: domain Description: PRK09413 Location: 339-5 01 bp Feature: gene Location: 1009-1422 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1330-1417 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1330-1417 bp Feature: gene Location: 1486-2361 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1492-1948 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1492-1948 bp Feature: domain Description: GIIM Note: maturase Location: 1996-2227 bp Feature: domain Description: GIIM Note: maturase Location: 1996-2227 bp Feature: gene Location: 2570-2971 bp Feature: gene Location: 3071-3718 bp Feature: domain Description: PinE Location: 3164-3713 bp Feature: domain Description: PinE Location: 3164-3713 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09413 (IS2 repressor TnpA; Reviewed), RVT-GII, GIIM (pfam08388), PinE (COG1961)